AT5G45700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29770.1); Has 2652 Blast hits to 2641 proteins in 258 species: Archae - 0; Bacteria - 12; Metazoa - 831; Fungi - 550; Plants - 465; Viruses - 15; Other Eukaryotes - 779 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18537378..18538196 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31512.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATKLILKKT TKSISRHQRN YLRRHRKSQI GCSPSPATTT VIATINKSIY RCHRTFLCLF SRHATKGFKI LKPREDFQNS PYSLFHERSG KSFDETKKTI 101: VLDLDETLVH SSMEKPEVPY DFVVNPKIDG QILTFFVIKR PGVDEFLKKI GEKYQIVVFT AGLREYASLV LDKLDPERRV ISRSFYRDAC SEIDGRLVKD 201: LGFVMRDLRR VVIVDDNPNS YALQPENAFP IKPFSDDLED VELKKLGEFL YGDCVKFEDM RVALKEFVGR DE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)