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AT5G45560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: lipid binding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYEeggNOG:ENOG4112846EMBL:AB018113EMBL:AB022213
EMBL:AY064989EMBL:CP002688EnsemblPlants:AT5G45560EnsemblPlants:AT5G45560.1
entrez:834592Gene3D:2.30.29.30Gene3D:3.30.530.20GeneID:834592
Genevisible:Q8VZF6GO:GO:0005789GO:GO:0005886GO:GO:0006952
GO:GO:0008289GO:GO:0010008GO:GO:0016021Gramene:AT5G45560.1
hmmpanther:PTHR12136hmmpanther:PTHR12136:SF47HOGENOM:HOG000005741InParanoid:Q8VZF6
InterPro:IPR001849InterPro:IPR002913InterPro:IPR009769InterPro:IPR011993
InterPro:IPR023393KEGG:ath:AT5G45560OMA:HDDNENAPaxDb:Q8VZF6
Pfam:PF01852Pfam:PF07059Pfam:Q8VZF6Pfscan:PS50003
Pfscan:PS50848PhylomeDB:Q8VZF6PRIDE:Q8VZF6PRO:PR:Q8VZF6
PROSITE:PS50003PROSITE:PS50848ProteinModelPortal:Q8VZF6Proteomes:UP000006548
RefSeq:NP_199369.2SMART:SM00233SMART:SM00234STRING:3702.AT5G45560.1
SUPFAM:SSF50729SUPFAM:SSF55961TAIR:AT5G45560UniGene:At.28292
UniProt:Q8VZF6
Coordinates (TAIR10) chr5:+:18465561..18470752
Molecular Weight (calculated) 81729.20 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.46
Length 719 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKVVYEGWM VRYGRRKIGR SYIHMRYFVL EPRLLAYYKK KPQDNQLPIK TMVIDGNCRV EDRGLKTHHG HMVYVLSIYN KKEKHHRITM AAFNIQEALM
101: WKEKIECVID QHQDSLVPSG QQYVSFEYKP GMDAGRTASS SDHESPFSAL EDENDSQRDL LRRTTIGNGP PESILDWTKE FDAELSNQSS SNQAFSRKHW
201: RLLQCQNGLR IFEELLEVDY LPRSCSRAMK AVGVVEATCE EIFELVMSMD GTRYEWDCSF HNGRLVEEVD GHTAILYHRL LLDWFPMVVW PRDLCYVRYW
301: RRNDDGSYVV LFRSREHENC GPQPGFVRAH LESGGFNIAP LKPRNGRPRT QVQHLIQIDL KGWGSGYLPA FQQHCLLQML NSVSGLREWF SQTDDRGQPI
401: RIPVMVNMAS SSLALGKGGK HHHKSSLSID QTNGASRNSV LMDEDSDDDD EFQIPDSEPE PETSKQDQET DAKKTEEPAL NIDLSCFSGN LRHDDNENAR
501: NCWRISDGNN FKVRGKSFCD DKRKIPAGKH LMDLVAVDWF KDTKRMDHVV RRKGCAAQVA AEKGLFSTVV NVQVPGSTHY SMVFYFVTKE LVPGSLFQRF
601: VDGDDEFRNS RLKLIPLVPK GSWIVRQSVG STPCLLGKAV DCNYIRGPTY LEIDVDIGSS TVANGVLGLV IGVITSLVVE MAFLVQANTP EELPERLIGA
701: VRVSHVELSS AIVPNLDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)