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AT5G45400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Replication factor-A protein 1-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RPA70C; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 1172 Blast hits to 939 proteins in 244 species: Archae - 33; Bacteria - 8; Metazoa - 314; Fungi - 240; Plants - 399; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1599eggNOG:KOG0851EMBL:AB018113EMBL:CP002688
EnsemblPlants:AT5G45400EnsemblPlants:AT5G45400.1entrez:834576Gene3D:2.40.50.140
GeneID:834576Genevisible:Q9FHJ6GO:GO:0003677GO:GO:0005634
GO:GO:0006260GO:GO:0006281GO:GO:0006310GO:GO:0008270
Gramene:AT5G45400.1hmmpanther:PTHR23273hmmpanther:PTHR23273:SF12HOGENOM:HOG000162322
InParanoid:Q9FHJ6InterPro:IPR004365InterPro:IPR004591InterPro:IPR007199
InterPro:IPR012340InterPro:IPR013955InterPro:IPR031657iPTMnet:Q9FHJ6
KEGG:ath:AT5G45400KO:K07466OMA:DWITVCAPaxDb:Q9FHJ6
Pfam:PF01336Pfam:PF04057Pfam:PF08646Pfam:PF16900
Pfam:Q9FHJ6PhylomeDB:Q9FHJ6PRIDE:Q9FHJ6PRO:PR:Q9FHJ6
ProteinModelPortal:Q9FHJ6Proteomes:UP000006548RefSeq:NP_199353.1SMR:Q9FHJ6
STRING:3702.AT5G45400.1SUPFAM:SSF50249TAIR:AT5G45400tair10-symbols:ATRPA70C
tair10-symbols:RPA70CTIGRfam:TIGR00617TIGRFAMs:TIGR00617UniGene:At.30014
UniProt:Q9FHJ6
Coordinates (TAIR10) chr5:+:18398990..18401644
Molecular Weight (calculated) 94398.90 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.57
Length 853 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSLTEGVV MKMLNGEVTS ETDMMPVLQV TELKLIQSKL HQNQESSNRY KFLLSDGTDL AAGMLNTSLN SLVNQGTIQL GSVIRLTHYI CNLIQTRRIV
101: VIMQLEVIVE KCNIIGNPKE PGHSSINPQR GGVNTQSNGG SEQQQARRSD VNGGRYGVSA NSPQPQVVHN SSDAGRYCVS ANSPQPQVVH SSSDAGRYGV
201: SANSPQRQVV HNSPDAGRYG QPQVSQRYGT GSGYPETSPS TRPYVSSNAG YGGSRQDQPR APTATTAYSR PVQSAYQPQQ PPMYVNRGPV ARNEAPPRIN
301: PIAALNPYQG RWTIKVRVTS KADLRRFNNP RGEGKLFSFD LLDADGGEIR VTCFNDAVDQ FFDKIVVGNV YLISRGNLKP AQKNFNHLPN DYEIHLDSAS
401: TIQPCEDDGT IPRYHFHFRN IGDIENMENN STTDVIGIVS SISPTVAIMR KNLTEVQKRS LQLKDMSGRS VEVTMWGNFC NAEGQKLQNL CDSGVFPVLA
501: LKAGRIGEFN GKQVSTIGAS QFFIEPDFPE ARELRQWYER EGRNAHFTSI SREFSGVGRQ EVRKVIAQIK DEKLGTSEKP DWITVCATIS FMKVENFCYT
601: ACPIMNGDRP CSKKVTNNGD GTWRCEKCDK CVDECDYRYI LQIQLQDHTD LTWATAFQEA GEEIMGMSAK DLYYVKYENQ DEEKFEDIIR SVAFTKYIFK
701: LKIKEETYSD EQRVKATVVK AEKLNYSSNT RFMLEAIDKL KIGDANSLPI KAESSNYRSD AFNSGVGTSG TRDTASVDAR REFGLPAANQ VGQYGNQYSS
801: DARSLGGFTS CNVCRSNSHV SANCPTLMSE PQGQYMGGTN AGGGMPRQHV GSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)