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AT5G45390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g45390-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At5g45390-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease P4
Curator
Summary (TAIR10)
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
CLP protease P4 (CLPP4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G45390-MONOMERBioGrid:19824EC:3.4.21.92eggNOG:COG0740eggNOG:KOG0840EMBL:AB018113EMBL:AB022329
EMBL:AJ000930EMBL:AY042832EMBL:AY087717EMBL:BT006321EMBL:CP002688EnsemblPlants:AT5G45390EnsemblPlants:AT5G45390.1
entrez:834575Gene3D:3.90.226.10GeneID:834575Genevisible:Q94B60GO:GO:0004252GO:GO:0009507GO:GO:0009532
GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009658GO:GO:0009840GO:GO:0009941GO:GO:0048510
Gramene:AT5G45390.1HAMAP:MF_00444hmmpanther:PTHR10381hmmpanther:PTHR10381:SF24HOGENOM:HOG000285833IntAct:Q94B60InterPro:IPR001907
InterPro:IPR023562InterPro:IPR029045InterPro:IPR033135KEGG:ath:AT5G45390KO:K01358MEROPS:S14.010OMA:ERDYWMD
PANTHER:PTHR10381PaxDb:Q94B60PDB:1R91PDBsum:1R91Pfam:PF00574Pfam:Q94B60PhylomeDB:Q94B60
PIR:T52452PRIDE:Q94B60PRINTS:PR00127PRO:PR:Q94B60PROSITE:PS00382ProteinModelPortal:Q94B60Proteomes:UP000006548
RefSeq:NP_568644.1scanprosite:PS00382SMR:Q94B60STRING:3702.AT5G45390.1SUPFAM:SSF52096TAIR:AT5G45390tair10-symbols:CLPP4
tair10-symbols:NCLPP4UniGene:At.387UniGene:At.67124UniProt:Q94B60
Coordinates (TAIR10) chr5:+:18396351..18397586
Molecular Weight (calculated) 31500.00 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.04
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)