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AT5G45360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Herpesvirus UL92 (InterPro:IPR004289); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19821eggNOG:ENOG410IGS6eggNOG:ENOG4111GM7EMBL:AB018113EMBL:AK227481EMBL:AY087595EMBL:BT002873
EMBL:BT004395EMBL:BT005876EMBL:CP002688EnsemblPlants:AT5G45360EnsemblPlants:AT5G45360.1entrez:834572GeneID:834572
Genevisible:Q9FHK0GO:GO:0016567hmmpanther:PTHR22990HOGENOM:HOG000242065InParanoid:Q9FHK0IntAct:Q9FHK0InterPro:IPR001810
iPTMnet:Q9FHK0KEGG:ath:AT5G45360OMA:HVCDDNCPaxDb:Q9FHK0Pfam:PF12937Pfam:Q9FHK0Pfscan:PS50181
PhylomeDB:Q9FHK0PRIDE:Q9FHK0PRO:PR:Q9FHK0PROSITE:PS50181ProteinModelPortal:Q9FHK0Proteomes:UP000006548RefSeq:NP_568643.1
SMART:SM00256STRING:3702.AT5G45360.1SUPFAM:SSF81383TAIR:AT5G45360UniGene:At.21436UniGene:At.48851UniPathway:UPA00143
UniProt:Q9FHK0
Coordinates (TAIR10) chr5:-:18384783..18386670
Molecular Weight (calculated) 36239.60 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.56
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)