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AT5G45320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.685
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZYMeggNOG:ENOG410YIP0EMBL:AB020744EMBL:AY800650EMBL:AY924852EMBL:CP002688EnsemblPlants:AT5G45320
EnsemblPlants:AT5G45320.1entrez:834568GeneID:834568GO:GO:0016021Gramene:AT5G45320.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF9
HOGENOM:HOG000093032KEGG:ath:AT5G45320OMA:QASTRWKPhylomeDB:Q9FH78Proteomes:UP000006548RefSeq:NP_199345.1TAIR:AT5G45320
TMHMM:TMhelixUniGene:At.51255UniProt:Q9FH78
Coordinates (TAIR10) chr5:-:18362354..18363053
Molecular Weight (calculated) 22169.30 Da
IEP (calculated) 8.71
GRAVY (calculated) 0.26
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRLTSRHGT SPFIWCAAII CAIISIVVIV GGIIVFVGYL VIHPRVPIIS VADAHLDFLK YDIVGVLQTQ LTIVIRVEND NAKAHALFDE TEFKLSYEGK
101: PIAILKAPEF EVVKEKSMFL PYLVQSYPIP LNPTMMQAVD YAVKKDVITF ELKGGSRTRW RVGPLGSVKF ECNLSCQLRF RPSDHSYIPS PCTSAHKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)