AT5G45220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.919 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45060.1); Has 3080 Blast hits to 1552 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3080; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18298926..18301069 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62307.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.71 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLSSSSSV ELPPQHTVFI LYNGSRMGFI YHLIMALEKK NINVFVGFNG CICEPVERLS NRIESIIVLV IFTSRYTESK WCLMKLVDIN KCAEKDHLVA 101: IPIFYKLDPS TVRGLSGQFG DAFRDLREST GLMEKWKEAL KSISDRPGIR VDKSSPKAKR IEIVVKKVLS RIPSEGSHNA SVDPLENSDT RLTSSGEENR 201: TFGIKERLKE FKDKLDLNKM RSQLGMVIGC LLVLFFVLKQ SAYTSTRLIG EGGAIGAISA IDRIADNVPK IREYVPEEGT EKPRDTYTEF HTGKYGTKPE 301: RSSSDVKTNA DLLDRTFTDT RMDGKVKPPK FQVFINFRGD QLRNNFVGYL VDALRRSEIN VFIDNQEQRG EDLNTLFKRI EDSGIAIVVF SSRYTESKWC 401: LEELVKIKER VHQGLLKVLP IFYKVTPTNV KRPKGEFGDH FRDKEYMYES DEPMIKRWKE AIVFISHRFA LTLDEKSSSE MLDTSLHMYV HARVWNLKEL 501: ISTFLTKCSS ALEIDFVETI VKEVLKILQA ICKVESSQSS FCAEKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)