AT5G45210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 10308 Blast hits to 9808 proteins in 326 species: Archae - 8; Bacteria - 189; Metazoa - 13; Fungi - 1; Plants - 9989; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:18295521..18298434 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79988.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.67 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 697 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSKADEVF IDFSGIETRN SFVSHLSAAF RRRSVSVCLG GDCTDVVTPR KTNEGCKVFV VVFSEDYALS KQCLDTLVEF LERKDDGLVI VPVYYGGVTE 101: SMVKQQTERF GVAFTQHQNN YSYDQVAKWR DCLIQTASLP GHELNLQQED SEFVEKIVAD VREVLDATGK IGIYSRLLEI EKLLCKQSLK FYYLGLWGMP 201: GIGKTTIAEA AFKQMSKDFD ASFFVEDFHK EYHKGRPYKL REEHLKKVPK GGSIRGPILS FKELREKKVL FVLDDVRNLM DFESFLGGIE GVSPGSVIIL 301: TSRDKQVLHQ CQVEDVFEVP SLNEEEAVRL FARTAFHKEG PSDAKLMDVS KKVARYAGGN PKALCFYGRE LEKKKKPEEM EEEFEKMRQC PPQEILSLFR 401: SSYDALNDNE RSIFLDIACF FNGEPCDDVM RILEGCGFFP HVGIDRLAER SLLTISKEKR VEMQGFIQDA AREFINQTSR RRRHWEPSRI RLLLENDKSK 501: GNEVIEGIFL DTTKLTFDVN PMAFENMYNL RLLKIYSTHS ETAQELRLTK ELRSLPYELR LLHWEKYPLQ SLPQDFDTRH LVELNMPYSQ LQSLCVGTKS 601: LAKLKMINLS HSQKLLEVDE LAKACNLEKI DLQGCTSLKS IPHTDRLKNL QFLNLSGCTS IKRTEAIKKI KGMNQEGCLR ETTFESMVFE YYVKESS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)