AT5G45170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G48420.1); Has 352 Blast hits to 346 proteins in 109 species: Archae - 0; Bacteria - 170; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18270555..18273129 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40743.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIASCSILN NLQISCTKTS IFTQYLSERS SHDTGRRNFL PFSNFPGKSQ ILGKCLRLQR FSSICLSASR EDVNPSEEFA VILEVDRVMI DTWSSNRQAF 101: NVAFQKLGLD CANWPEPVYS DLLRKGAADE EKMLLLYFNQ IGWPSSLPTS EKASFVKSVL REKKNAMDEF LISKSLPLRS GVQEFIDNAY AEKVPVAIVT 201: AYCKSGDKVA LSIVEMLGQE RLPNVKVIGD NEVEQSMYGQ LVLGKGVSSS LEEQLVKEVK KAASAEKQRI AEEVASMLKL SVDIDTTSSE RLEKIVVALR 301: AAAEHIGLPV NNCVLVAGSQ PGVSAAKMIG MPCVVMRSSL TARGEFPSAK GVMDGFGGAD LTIPKLRNKI KS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)