AT5G45160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Root hair defective 3 GTP-binding protein (RHD3) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Root hair defective 3 GTP-binding protein (RHD3); FUNCTIONS IN: GTP binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 535 Blast hits to 521 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 186; Plants - 129; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18264991..18270035 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93574.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 834 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGENDDGCST QLIDGNGEFN VKGLDNFVKK TKLSDCGLSY AVVAIMGPQS SGKSTLLNHL FKTSFREMDA FAGRSQTTKG IWMARCVGIE PFTIAMDLEG 101: TDGRERGEDD TTFEKQSALF AIAVADIVLI NMWCHDIGRE QAANKPLLKT VFQVMLRLFS PRKTTLLFVI RDKTKTPIEL LERALREDIQ KIWDSVRKPE 201: AHKNTPLNEF FNVMIVALSS YEEKEKQFEQ EVAELRQRFF HSISPGGLAG DRRGVVPASG FSFSSQQIWK VIKENRDLDL PAHKVMVATV RCEEIANEKL 301: RDLATNESWL ELHEAAEGGL VPGFGKKLSS ILEKYFSEYD AEAIYFDEGV RKEKRLQLKL NALDFVYPSY ATMLGHLRSN ALESFKIRLE QSLNQGEGFA 401: KAVRDSQQSC LMVFDKGCED AAVKQATWDA SKIREKLCRD IDAHTFFARS AKLSELTANY EKRLTQALSE PVESLFEAGG KETWPSIRKL LKRETETAVT 501: DFLDVVTGFE LDHAKIDAMV QNLKNYSQSL VEKKAREEAA KILIRMKDRF STVFSHDKDS MPRVWTGKED IRAITKDARA EALSLLSVMT AIRLDERPDN 601: IESTLFSSLM DGTVSAASSH NRSVGTSTDP LASSSWEEVP PNNILLTPVQ CKSLWRQFKS ETEYTVTQAI SAQEAHKRNN NWLPPAWAIV LMIVLGFNEF 701: MMLLKNPLYL LGFFVAFLLS KALWVQLDIP REFQHGAVAG VLSITSKFLP TVMNLLRKLA EEAQGKTTQE VPDLSASQTY RQQSPSHSIS STISESVASN 801: ISSAGDDAEY SSPSPALVRR RNTNNVQESE ISQM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)