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AT5G45140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear RNA polymerase C2
Curator
Summary (TAIR10)
Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
Computational
Description (TAIR10)
nuclear RNA polymerase C2 (NRPC2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1); Has 31946 Blast hits to 25220 proteins in 8516 species: Archae - 496; Bacteria - 14545; Metazoa - 599; Fungi - 7189; Plants - 2320; Viruses - 240; Other Eukaryotes - 6557 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.6eggNOG:COG0085eggNOG:KOG0215EMBL:AB012240
EMBL:AY123987EMBL:CP002688EnsemblPlants:AT5G45140EnsemblPlants:AT5G45140.1
entrez:834550Gene3D:2.40.270.10Gene3D:2.40.50.150Gene3D:3.90.1110.10
GeneID:834550Genevisible:F4KD38GO:GO:0003677GO:GO:0003899
GO:GO:0005666GO:GO:0006383GO:GO:0032549GO:GO:0046872
Gramene:AT5G45140.1hmmpanther:PTHR20856hmmpanther:PTHR20856:SF8InParanoid:F4KD38
InterPro:IPR007120InterPro:IPR007121InterPro:IPR007641InterPro:IPR007642
InterPro:IPR007644InterPro:IPR007645InterPro:IPR007646InterPro:IPR007647
InterPro:IPR014724InterPro:IPR015712KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6
KEGG:ath:AT5G45140KO:K03021OMA:VCEDLIRPANTHER:PTHR20856
PaxDb:F4KD38Pfam:PF00562Pfam:PF04560Pfam:PF04561
Pfam:PF04563Pfam:PF04565Pfam:PF04566Pfam:PF04567
PRIDE:F4KD38PROSITE:PS01166ProteinModelPortal:F4KD38Proteomes:UP000006548
Reactome:R-ATH-1834949RefSeq:NP_199327.4scanprosite:PS01166SMR:F4KD38
STRING:3702.AT5G45140.1SUPFAM:SSF64484TAIR:AT5G45140tair10-symbols:NRPC2
UniGene:At.9250UniProt:F4KD38
Coordinates (TAIR10) chr5:-:18247416..18257713
Molecular Weight (calculated) 130219.00 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.24
Length 1161 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGLDQEDLDL TNDDHFIDKE KLSAPIKSTA DKFQLVPEFL KVRGLVKQHL DSFNYFINVG IHKIVKANSR ITSTVDPSIY LRFKKVRVGE PSIINVNTVE
0101: NINPHMCRLA DMTYAAPIFV NIEYVHGSHG NKAKSAKDNV IIGRMPIMLR SCRCVLHGKD EEELARLGEC PLDPGGYFII KGTEKVLLIQ EQLSKNRIII
0201: DSDKKGNINA SVTSSTEMTK SKTVIQMEKE KIYLFLHRFV KKIPIIIVLK AMGMESDQEI VQMVGRDPRF SASLLPSIEE CVSEGVNTQK QALDYLEAKV
0301: KKISYGTPPE KDGRALSILR DLFLAHVPVP DNNFRQKCFY VGVMLRRMIE AMLNKDAMDD KDYVGNKRLE LSGQLISLLF EDLFKTMLSE AIKNVDHILN
0401: KPIRASRFDF SQCLNKDSRY SISLGLERTL STGNFDIKRF RMHRKGMTQV LTRLSFIGSM GFITKISPQF EKSRKVSGPR SLQPSQWGML CPCDTPEGES
0501: CGLVKNLALM THVTTDEEEG PLVAMCYKLG VTDLEVLSAE ELHTPDSFLV ILNGLILGKH SRPQYFANSL RRLRRAGKIG EFVSVFTNEK QHCVYVASDV
0601: GRVCRPLVIA DKGISRVKQH HMKELQDGVR TFDDFIRDGL IEYLDVNEEN NALIALYESD GTTELDEGAE AAKADTTHIE IEPFTILGVV AGLIPYPHHN
0701: QSPRNTYQCA MGKQAMGNIA YNQLNRMDTL LYLLVYPQRP LLTTRTIELV GYDKLGAGQN ATVAVMSFSG YDIEDAIVMN KSSLDRGFGR CIVMKKIVAM
0801: SQKYDNCTAD RILIPQRTGP DAEKMQILDD DGLATPGEII RPNDIYINKQ VPVDTVTKFT SALSDSQYRP AREYFKGPEG ETQVVDRVAL CSDKKGQLCI
0901: KYIIRHTRRP ELGDKFSSRH GQKGVCGIII QQEDFPFSEL GICPDLIMNP HGFPSRMTVG KMIELLGSKA GVSCGRFHYG SAFGERSGHA DKVETISATL
1001: VEKGFSYSGK DLLYSGISGE PVEAYIFMGP IYYQKLKHMV LDKMHARGSG PRVMMTRQPT EGKSKNGGLR VGEMERDCLI AYGASMLIYE RLMISSDPFE
1101: VQVCRACGLL GYYNYKLKKA VCTTCKNGDN IATMKLPYAC KLLFQELQSM NVVPRLKLTE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)