AT5G45060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 23011 Blast hits to 16697 proteins in 710 species: Archae - 20; Bacteria - 1528; Metazoa - 2742; Fungi - 144; Plants - 17776; Viruses - 0; Other Eukaryotes - 801 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18182038..18186067 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132408.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1165 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASSSSTGL PPQHQVFINF RGEDLRLGFV SHLVEALEND NIKVFIDNYA DKGEPLETLL TKIHDSKIAL AIFSGKYTES TWCLRELAMI KDCVEKGKLV 0101: AIPIFYKVDP STVRGVRGQF GDAFRDLEER DVIKKKEWKQ ALKWIPGLIG ITVHDKSPES EILNEIVKEV KKVLKKVSLE GSQKVVSVDP SQSIDTLSSV 0201: GGEKDKTFGI KQRLKELEEK LDLVKYKGTR VIGVVGMPGI GKTTLVKELY KTWQGKFSRY ALIDQIRGKS NNFRLECLPT LLLEKLLPEL NNPQLDSIEE 0301: PYKTHKGLLR ERKVLVVLDD VSRREQIYAL LGKYDLHSKH EWIKDGSRII IATNDISSLK GLVHDTYVVR QLNHRDGLQL FRYHAFHYDQ ATPPKVDFMK 0401: LSDEFVHYAR GHPLALKILG RELYEKNMKH WETKLIILAQ SPTTYIGEVV QVSYDELSLA QKDAFLDIAC FRSQDVDYVE SLLVSSDPGS AEAIKALKNK 0501: FLIDTCDGRV EMHDLLYRFS RELDLKASTQ GGSKQRRLWV RQDIINVQQK TMGAANVRGI FLDLSEVKVE TSLDREHFKN MRNLRYLKLY NSHCPHECLT 0601: NNKINMPDGL ELPLKEVRCL HWLKFPLEEL PNDFDPINLV DLKLPYSEIE RLWDGVKDTP VLKWVDLNHS SKLCSLSGLS KAQNLQRLNL EGCTSLESLR 0701: DVNLTSLKTL TLSNCSNFKE FPLIPENLKA LYLDGTSISQ LPDNVGNLKR LVLLNMKDCK VLETIPTCVS ELKTLQKLVL SGCSKLKEFP EINKSSLKIL 0801: LLDGTSIKTM PQLPSVQYLC LSRNDHLIYL PAGINQVSQL TRLDLKYCTK LTYVPELPPT LQYLDAHGCS SLKNVAKPLA RIMSTVQNHY TFNFTNCGNL 0901: EQAAKEEITS YAQRKCQLLS DARKHYNEGS EALFSTCFPG CEVPSWFGHE AVGSLLQRKL LPHWHDKRLS GIALCAVVSF PDSQDQLSCF SVTCTFKIKA 1001: EDKSWVPFTC PVGIWTREGN KKDRIESDHV FIAYISSPHS IRCLEEKNSD KCNFSEASLE FTVTSDTSGI GVFKVLKCGL SLVYENDKNK NSSLEAKYDV 1101: PVEVSFQEPE HGIMEEERYI NKRRSDDRRP KKKRKTKRDD IMIISTVTQT CVPSVNARIE DKVTG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)