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AT5G45000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.681
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: structural molecules;transmembrane receptors;structural molecules (TAIR:AT1G51270.2); Has 3171 Blast hits to 1622 proteins in 83 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 3091; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSZGeggNOG:ENOG41108BWEMBL:AK221580EMBL:CP002688EnsemblPlants:AT5G45000EnsemblPlants:AT5G45000.1entrez:834531
Gene3D:3.40.50.10140GeneID:834531GO:GO:0007165Gramene:AT5G45000.1hmmpanther:PTHR32009hmmpanther:PTHR32009:SF2InterPro:IPR000157
KEGG:ath:AT5G45000OMA:KERFAMEPfam:PF01582Pfscan:PS50104PhylomeDB:Q56XU3PROSITE:PS50104Proteomes:UP000006548
RefSeq:NP_199313.3SMART:SM00255SMR:Q56XU3STRING:3702.AT5G45000.1SUPFAM:SSF52200TAIR:AT5G45000UniGene:At.55375
UniProt:Q56XU3
Coordinates (TAIR10) chr5:+:18165427..18167005
Molecular Weight (calculated) 48708.00 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.38
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVPSIYSEE IPPQHQVFIN FRGEELRKSF LGFLLKAMRD AKINVFTDEI EVRGRDIQNL LSRIEESRVA IAILSKRYTE SSWCLDELVK MKERIDQDEL
101: VVIPIFYRLD ATNCKRLEGP FGDNFRNLER DYRSEPERIK KWKEALISIP QKIGLTSAGH RDESELVDSI VKEVKKVLID VSRKDRNNSQ NSTNIKGQSF
201: EPLMAELDRL PTRRPQVFVN FCNDELGDNF IKHLVWALRD SGINVFKDSF KLIGSGQKQE VFMSIENSNI ALAIFSKRYS ESYRCLNELV KMEELAKEGK
301: LVVIPVFYSV KTNEVRRLEG EFGIHFRNTK ERFAMEPMMV ESWEKSLKSS TVTGRIGLSL EAHMNEFALV GAIVKEVTRL LPNSPKKKKK KKIRYWRSFL
401: EGFDCYIYLC CLHIPYAYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)