AT5G45000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: structural molecules;transmembrane receptors;structural molecules (TAIR:AT1G51270.2); Has 3171 Blast hits to 1622 proteins in 83 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 3091; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18165427..18167005 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48708.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVPSIYSEE IPPQHQVFIN FRGEELRKSF LGFLLKAMRD AKINVFTDEI EVRGRDIQNL LSRIEESRVA IAILSKRYTE SSWCLDELVK MKERIDQDEL 101: VVIPIFYRLD ATNCKRLEGP FGDNFRNLER DYRSEPERIK KWKEALISIP QKIGLTSAGH RDESELVDSI VKEVKKVLID VSRKDRNNSQ NSTNIKGQSF 201: EPLMAELDRL PTRRPQVFVN FCNDELGDNF IKHLVWALRD SGINVFKDSF KLIGSGQKQE VFMSIENSNI ALAIFSKRYS ESYRCLNELV KMEELAKEGK 301: LVVIPVFYSV KTNEVRRLEG EFGIHFRNTK ERFAMEPMMV ESWEKSLKSS TVTGRIGLSL EAHMNEFALV GAIVKEVTRL LPNSPKKKKK KKIRYWRSFL 401: EGFDCYIYLC CLHIPYAYA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)