suba logo
AT5G44920.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT4G19920.1); Has 1563 Blast hits to 1505 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AK227788EMBL:CP002688EnsemblPlants:AT5G44920EnsemblPlants:AT5G44920.1entrez:834522ExpressionAtlas:Q0WSX8Gene3D:3.40.50.10140
GeneID:834522GO:GO:0005783GO:GO:0007165GO:GO:0016021Gramene:AT5G44920.1hmmpanther:PTHR32009hmmpanther:PTHR32009:SF3
HOGENOM:HOG000015175InterPro:IPR000157Pfam:PF01582Pfscan:PS50104PhylomeDB:Q0WSX8PROSITE:PS50104Proteomes:UP000006548
RefSeq:NP_851131.1SMART:SM00255SMR:Q0WSX8SUPFAM:SSF52200SwissPalm:Q0WSX8TAIR:AT5G44920TMHMM:TMhelix
UniGene:At.48063UniGene:At.9153UniProt:Q0WSX8
Coordinates (TAIR10) chr5:+:18138965..18139994
Molecular Weight (calculated) 29700.70 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.41
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEQVQEPLS DQVFINFRGD ELREIFVNHL ELQLRNAGIN VFIDTKEQKG RRLQYLFTRI KKSKIALAIF SKRYCESKWC LDELVTMNEQ MKEKKLVVIP
101: IFYNVRSDDV KRAANPDGEG NLDGEFSLPF KQLKQNHAGE PERVEGWERA LRSVTKRIGF SRSNSKYKHD TDFVLDIVKE VKKQLNIPTD NSWSAIGVAF
201: LAITINLIFS FFIAPKYLPD QKFFQTPEWF IGTLAVVLAS WFWYKNNQNK APPPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)