AT5G44870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G36150.1); Has 23795 Blast hits to 16714 proteins in 621 species: Archae - 14; Bacteria - 2108; Metazoa - 2505; Fungi - 108; Plants - 18129; Viruses - 0; Other Eukaryotes - 931 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18114666..18118608 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133406.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1170 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASSEILPE SWQVFINFRG ADLRNGFISH LAGALTSAGI TYYIDTEEVP SEDLTVLFKR IEESEIALSI FSSNYAESKW CLDELVKIME QVKKGKLRIM 0101: PVFFNVKPEE VREQNGEFGL KLYGEGKSKR PNIPNWENAL RSVPSKIGLN LANFRNEKEL LDKIIDSIKK VLARITRASR VAESLNGISK DSEAKNVDTF 0201: SPNSSDFPST SIDDDLSINS PQYQATIPPA SREGERLNTI STVSSTGSIE HPPPNYGIEP RLKEMEEKLD FDSLETKTVG IVGMPGIGKT TLAETLYRKW 0301: EHKFERSMFF PDASKMANEH GMCWLQKRLL EELLKDTNLN IGYTTNEHEF CKDVLLLKKV FLVIDNVSSE EQIETLFGKW NWIKNGSKIV ITSSDESMLK 0401: GFVKDTYVVP SLNSRDSLLW FTNHAFGLDD AQGNLVKLSK HFLNYAKGNP LALGAFGVEL CGKDKADWEK RIKTLTLISN KMIQDVLRRR YDELTERQKD 0501: IFLDVACFFK SENESYVRHV VNSCDSESTK SWDEITDLKG KFLVNISGGR VEMHDILCTF AKELASQALT EDTRVHLRLW NYQDIMWFLN NELEMENVRG 0601: IFLDMSKVPE EMTFDGNIFS NMCNLRYLKI YSSVCHKEGE GIFKFDTVRE IQLPLDKVRY LHWMKYPWEK LPSDFNPENL VDLELPYSSI KKVWEGVKDT 0701: PILKWANLSY SSKLTNLLGL SNAKNLERLN LEGCTSLLKL PQEMENMKSL VFLNMRRCTS LTCLQSIKVS SLKILILSDC SKLEEFEVIS ENLEELYLDG 0801: TAIKGLPPAA GDLTRLVVLN MEGCTELESL PKRLGKQKAL QELVLSGCSK LESVPTDVKD MKHLRLLLLD GTRIRKIPKI KSLKCLCLSR NIAMVNLQDN 0901: LKDFSNLKCL VMKNCENLRY LPSLPKCLEY LNVYGCERLE SVENPLVADR LTLFLDRSEE LRSTFLFTNC HNLFQDAKDS ISTYAKWKCH RLAVECYEQD 1001: IVSGAFFNTC YPGYIVPSWF DHQAVGSVLE PRLEPHWYNT MLSGIALCAV VSFHENQDPI IGSFSVKCTL QFENEDGSLR FDCDIGCLNE PGMIEADHVF 1101: IGYVTCSRLK DHHSIPIHHP TTVKMQFHLT DACKSKVVDC GFRLMYTQSR GCLLEEEVNA NFTKLYLGLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)