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AT5G44870.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G36150.1); Has 23795 Blast hits to 16714 proteins in 621 species: Archae - 14; Bacteria - 2108; Metazoa - 2505; Fungi - 108; Plants - 18129; Viruses - 0; Other Eukaryotes - 931 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886EMBL:AB010693EMBL:AC002342EMBL:CP002688EnsemblPlants:AT5G44870EnsemblPlants:AT5G44870.1entrez:834517
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834517Genevisible:O48573GO:GO:0005524GO:GO:0007165
GO:GO:0009615GO:GO:0009626GO:GO:0043531GO:GO:0051607Gramene:AT5G44870.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF157
HOGENOM:HOG000064702InParanoid:O48573InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G44870OMA:YGCERLEPaxDb:O48573Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PhylomeDB:O48573PRIDE:O48573PRO:PR:O48573PROSITE:PS50104ProteinModelPortal:O48573Proteomes:UP000006548RefSeq:NP_199300.1
SMART:SM00255SMR:O48573STRING:3702.AT5G44870.1SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G44870
tair10-symbols:LAZ5UniGene:At.55368UniProt:O48573
Coordinates (TAIR10) chr5:+:18114666..18118608
Molecular Weight (calculated) 133406.00 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.26
Length 1170 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAASSEILPE SWQVFINFRG ADLRNGFISH LAGALTSAGI TYYIDTEEVP SEDLTVLFKR IEESEIALSI FSSNYAESKW CLDELVKIME QVKKGKLRIM
0101: PVFFNVKPEE VREQNGEFGL KLYGEGKSKR PNIPNWENAL RSVPSKIGLN LANFRNEKEL LDKIIDSIKK VLARITRASR VAESLNGISK DSEAKNVDTF
0201: SPNSSDFPST SIDDDLSINS PQYQATIPPA SREGERLNTI STVSSTGSIE HPPPNYGIEP RLKEMEEKLD FDSLETKTVG IVGMPGIGKT TLAETLYRKW
0301: EHKFERSMFF PDASKMANEH GMCWLQKRLL EELLKDTNLN IGYTTNEHEF CKDVLLLKKV FLVIDNVSSE EQIETLFGKW NWIKNGSKIV ITSSDESMLK
0401: GFVKDTYVVP SLNSRDSLLW FTNHAFGLDD AQGNLVKLSK HFLNYAKGNP LALGAFGVEL CGKDKADWEK RIKTLTLISN KMIQDVLRRR YDELTERQKD
0501: IFLDVACFFK SENESYVRHV VNSCDSESTK SWDEITDLKG KFLVNISGGR VEMHDILCTF AKELASQALT EDTRVHLRLW NYQDIMWFLN NELEMENVRG
0601: IFLDMSKVPE EMTFDGNIFS NMCNLRYLKI YSSVCHKEGE GIFKFDTVRE IQLPLDKVRY LHWMKYPWEK LPSDFNPENL VDLELPYSSI KKVWEGVKDT
0701: PILKWANLSY SSKLTNLLGL SNAKNLERLN LEGCTSLLKL PQEMENMKSL VFLNMRRCTS LTCLQSIKVS SLKILILSDC SKLEEFEVIS ENLEELYLDG
0801: TAIKGLPPAA GDLTRLVVLN MEGCTELESL PKRLGKQKAL QELVLSGCSK LESVPTDVKD MKHLRLLLLD GTRIRKIPKI KSLKCLCLSR NIAMVNLQDN
0901: LKDFSNLKCL VMKNCENLRY LPSLPKCLEY LNVYGCERLE SVENPLVADR LTLFLDRSEE LRSTFLFTNC HNLFQDAKDS ISTYAKWKCH RLAVECYEQD
1001: IVSGAFFNTC YPGYIVPSWF DHQAVGSVLE PRLEPHWYNT MLSGIALCAV VSFHENQDPI IGSFSVKCTL QFENEDGSLR FDCDIGCLNE PGMIEADHVF
1101: IGYVTCSRLK DHHSIPIHHP TTVKMQFHLT DACKSKVVDC GFRLMYTQSR GCLLEEEVNA NFTKLYLGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)