AT5G44780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20020.2); Has 9661 Blast hits to 6233 proteins in 635 species: Archae - 4; Bacteria - 1116; Metazoa - 4251; Fungi - 1510; Plants - 1359; Viruses - 43; Other Eukaryotes - 1378 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18068100..18070544 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79039.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMFSHRLRR IVVAAPSYFQ RFSTLSRPSD FTPVPSLLPR SVVKQSTAIN RSPARLFSTT QYQYDPYTGE DSFMPDNEGC DFNHWLITMN FPKDNLPSRE 101: EMISIFEQTC AKGLAISLEE AKKKIYAICT TSYQGFQATM TIGEVEKFRD LPGVQYIIPD SYIDVENKVY GGDKYENGVI TPGPVPVPTK EGFDSLKKES 201: KPEQEEAEII LTPPDEGKTS GQVQGQGSLT LPDQRSVKER QGTLALVQGQ GQRSGMSILG QGQGEGRRMS IPGQWQSRGQ GNSFQGSFKQ SQGTLPVRKG 301: QTQISDEIPS FQGNVKQRQE MPIHGQGQAQ RSQMPSSQGT LRQGQAQGSQ RPSNQVGYNQ GQGAQTPPYH QGQGAQTPPY QESPNNYGQG AFVQYNQGPP 401: QGNVVQTTQE KYNQMGQGNY APQSGGNYSP AQGAGSPRFG YGQGQGGQLL SPYRGNYNQG QGTPLPGQGQ EGQPSYQMGF SQGLGAPVPP NQVIPGNYGQ 501: WAFVNYNQGP PQGNFLQGPQ QNHNQGGQWN YSPQNGGHYG PAQFGQWYPG PPQGQGIQWP QYQLSYNQGQ GTPFSGQCRC PNCGMTSYQG YNNQGQGTHI 601: PEQWEGQDYA VLSYQASYNQ AHGAQAPPYH GNYNQATPGG YGQGTSANFN QRFPVNPANY NMQNGGNYGP PHGLAGNPGF RQGFSGQGQN QTFQQDDQRN 701: VAGDLRNNNP VDPTETRKPN SRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)