AT5G44760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 domain-containing protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT4G20080.1); Has 678 Blast hits to 384 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 676; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18060586..18062764 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53937.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEHDFSLKE TCPKIGGRRS IPGGDMLTSS FDLVERMTFL YIRIVKARAL PSNDLFVEVT IGRYKGRTKR STNPYPNLEF DEVFAFNSDR LQGNMLEVTM 101: KMNEEEIIGQ CRFEVAEIPT RIPPDSPLAP QWDRLEDRNA NRFGEEVMVS VWMGTQADEV CPEAWHSDSA TVTGENAVIV RSKVYLSPRL WYLRVNVIEA 201: QVLVLLQGNR TNPEVLVKGF VGNVVVRSRV SQSRTMSPVL ERGYDVGQKE ECLGLCEIKL SQVERRVLPG PVPALWYNLE RVGDSGFAGR IHLRVSLDGG 301: YHVLDESIQY SSDYRASAKL LWTPTIGVLV LGVISASGSI PMKSRDGRGT TDAYCVAKYG QKWLGRSEPP LGRDVIEYML DFGSNIWCLR RGRAHFERIV 401: SFFTTFIDSW IWFDSVCKWK SPLSKADSAL PDELDEEFDG FPSARSADLV RNSGLWSNLL SLHETANDFA CVLRHETP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)