AT5G44750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-directed DNA polymerases | ||||||||||||||||
| Curator Summary (TAIR10) |
Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). | ||||||||||||||||
| Computational Description (TAIR10) |
REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT1G49980.1); Has 10364 Blast hits to 10129 proteins in 2421 species: Archae - 210; Bacteria - 6656; Metazoa - 678; Fungi - 378; Plants - 159; Viruses - 3; Other Eukaryotes - 2280 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18052669..18059581 | ||||||||||||||||
| Molecular Weight (calculated) | 121767.00 Da | ||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||
| Length | 1101 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI 0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS 0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG 0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV 0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE 0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG 0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR 0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP 0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM 0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF 1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI 1101: P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)