AT5G44730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 2267 Blast hits to 2267 proteins in 873 species: Archae - 225; Bacteria - 1528; Metazoa - 193; Fungi - 90; Plants - 101; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18045588..18046519 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28810.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 255 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVSLLSKLR CITVDVTGTL IAYKGELGDY YCMAAKAIGL PCPDYKRVHE GFKLAYTDMA QKYPCFGFHA KMPNIVWWKT CVRDSFVKAG YEYDEETFEK 101: IFRRIYSTFG SAAPYSVFQD SQPFLRWARR KGLIVGLVSN AEYRYQEVIL PSFGLSKAEW DFGVFSGIEG IEKPDPRIFT LALERAGNNI APEEVLHIGD 201: SMRKDYVPAK SIGMHALLVD RFKTEAAKDW IEAGAIVLPD LVAVQQLLES DKLKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)