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AT5G44680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT3G12710.1); Has 3656 Blast hits to 3656 proteins in 1559 species: Archae - 10; Bacteria - 3140; Metazoa - 4; Fungi - 4; Plants - 168; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44680-MONOMEReggNOG:COG2818eggNOG:ENOG410IFGJEMBL:AB016874EMBL:BT003900EMBL:BT004932EMBL:CP002688
EnsemblPlants:AT5G44680EnsemblPlants:AT5G44680.1entrez:834497Gene3D:1.10.340.30GeneID:834497GO:GO:0006284GO:GO:0008725
Gramene:AT5G44680.1hmmpanther:PTHR31116hmmpanther:PTHR31116:SF4InterPro:IPR005019InterPro:IPR011257KEGG:ath:AT5G44680KO:K01246
OMA:NTFREAFPfam:PF03352PhylomeDB:Q9FIZ5Proteomes:UP000006548RefSeq:NP_199281.1SMR:Q9FIZ5STRING:3702.AT5G44680.1
SUPFAM:SSF48150TAIR:AT5G44680UniGene:At.23434UniProt:Q9FIZ5
Coordinates (TAIR10) chr5:-:18024461..18025893
Molecular Weight (calculated) 39508.00 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.51
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSSKLKNLT QENISQINGR PVLQPKSNQV PTLDRRNSLK KSPPKPLNPI ASKIPSPRPI SLISPPLSPN TKSLRKPAGS CKELLRSSST KSKPVISPEN
101: SDGGYKEVMP MVIVQKQPGS IAAARREEVA MKQEERKKKI SHYGRIKSVK SNEKNLNVEH EKKKRCSFIT TSSDPIYVAY HDKEWGVPVH DDNLLFELLV
201: LTGAQVGSDW TSVLKRRNTF REAFSGFEAE LVADFNEKKI QSIVNDYGIN LSQVLAVVDN AKQILKVKRD LGSFNKYIWG FMKHKPVTTK YTSCQKIPVK
301: TSKSETISKD MVRRGFRFVG PTVIHSLMQA AGLTNDHLIT CPRHLECTAM AAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)