AT5G44660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins in 141 species: Archae - 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18015810..18017081 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46642.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.67 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAAVLMPTI SFRDESARED WQVLSRNDSK KKILVKQTSM MQSEREISMD PKSIRSLSMS GSLRRNDSFD MVRLPAMSPP RDLDSPMPLP LQPVQTTGSP 101: KQRSGLMRAL RNREQDSLPN SPKQRSGLMR AFRNKDQDSL PNSTTGSPKQ RSGLMRALRN KEQDSLPNST TGSPKQRSGL MRALRNKEQD SSSASYKRSK 201: SCGSTSKTLS HKSSGIRNSF FIKTDSNKSI SNNSTLEDRF KCNALCLFLP GFSKGKPIRS SQKDDSSSFT RTTTMTRSSS STITVSRTVS VRESTTTTTV 301: ISARASMEKF DCGSYTSESC GEEGGNHFFD LPSELIKSGS GDNDHDEPVS AAFVFDKEPV EKEIKGVLKV SGSKNRKAME SPSLRQVRFS TSSPVSYPTS 401: PAISPRLLEA TKNFNAFLEA QAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)