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AT5G44660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins in 141 species: Archae - 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXR6eggNOG:ENOG41103RIEMBL:AB024024EMBL:AK228589EMBL:BT015343EMBL:BT015857EMBL:BT021131
EMBL:CP002688EnsemblPlants:AT5G44660EnsemblPlants:AT5G44660.1entrez:834495GeneID:834495Gramene:AT5G44660.1hmmpanther:PTHR33672
hmmpanther:PTHR33672:SF2HOGENOM:HOG000115010KEGG:ath:AT5G44660OMA:LRNKEQDPhylomeDB:Q9LU00Proteomes:UP000006548RefSeq:NP_199279.1
TAIR:AT5G44660UniGene:At.30061UniGene:At.74851UniProt:Q9LU00
Coordinates (TAIR10) chr5:+:18015810..18017081
Molecular Weight (calculated) 46642.00 Da
IEP (calculated) 10.67
GRAVY (calculated) -0.76
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAAVLMPTI SFRDESARED WQVLSRNDSK KKILVKQTSM MQSEREISMD PKSIRSLSMS GSLRRNDSFD MVRLPAMSPP RDLDSPMPLP LQPVQTTGSP
101: KQRSGLMRAL RNREQDSLPN SPKQRSGLMR AFRNKDQDSL PNSTTGSPKQ RSGLMRALRN KEQDSLPNST TGSPKQRSGL MRALRNKEQD SSSASYKRSK
201: SCGSTSKTLS HKSSGIRNSF FIKTDSNKSI SNNSTLEDRF KCNALCLFLP GFSKGKPIRS SQKDDSSSFT RTTTMTRSSS STITVSRTVS VRESTTTTTV
301: ISARASMEKF DCGSYTSESC GEEGGNHFFD LPSELIKSGS GDNDHDEPVS AAFVFDKEPV EKEIKGVLKV SGSKNRKAME SPSLRQVRFS TSSPVSYPTS
401: PAISPRLLEA TKNFNAFLEA QAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)