AT5G44500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Small nuclear ribonucleoprotein family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B (TAIR:AT4G20440.4); Has 60118 Blast hits to 30363 proteins in 1233 species: Archae - 62; Bacteria - 7735; Metazoa - 31237; Fungi - 6515; Plants - 7441; Viruses - 1395; Other Eukaryotes - 5733 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17927505..17928269 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27001.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMSKSSKML QFINYRMRVT IQDGRQLIGK FMAFDRHMNL VLGDCEEFRK LPPAKGNKKT NEEREERRTL GLVLLRGEEV ISMTVEGPPP PEESRAKSGS 101: VTAVAGPGIG RAAGRGVPTG PLVQAQPGLS GPVRGIGGPA PGMMQPQISR PPQIIRPPGQ MPPQPPFAGQ GGPPPPYGMR PPYPGPPPPQ YGGQQRPMMI 201: PPPGGMMRGP PPPHGMQGPP PSRPGMPPPG GAPMFAPPHP GMPPAPPNHH NQQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)