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AT5G44480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.689
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
mutant has Altered lateral root; UDP Glucose Epimerase
Computational
Description (TAIR10)
DEFECTIVE UGE IN ROOT (DUR); FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 43907 Blast hits to 43898 proteins in 2978 species: Archae - 781; Bacteria - 26377; Metazoa - 699; Fungi - 699; Plants - 1223; Viruses - 32; Other Eukaryotes - 14096 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44480-MONOMERBRENDA:5.1.3.5EC:5.1.3.5eggNOG:COG1087
eggNOG:KOG1371EMBL:AB017065EMBL:CP002688EnsemblPlants:AT5G44480
EnsemblPlants:AT5G44480.1entrez:834475Gene3D:3.40.50.720GeneID:834475
Genevisible:Q9FI17GO:GO:0003978GO:GO:0006012GO:GO:0016021
GO:GO:0032580GO:GO:0033358GO:GO:0045227GO:GO:0050373
Gramene:AT5G44480.1gramene_plant_reactome:1119574gramene_plant_reactome:6875778hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF326HOGENOM:HOG000168001InParanoid:Q9FI17InterPro:IPR005886
InterPro:IPR016040KEGG:00052+5.1.3.2KEGG:00520+5.1.3.2KEGG:ath:AT5G44480
KO:K12448OMA:DARVNILPaxDb:Q9FI17Pfam:PF16363
Pfam:Q9FI17PhylomeDB:Q9FI17PRIDE:Q9FI17PRO:PR:Q9FI17
ProteinModelPortal:Q9FI17Proteomes:UP000006548RefSeq:NP_199261.1SMR:Q9FI17
STRING:3702.AT5G44480.1SUPFAM:SSF51735TAIR:AT5G44480tair10-symbols:DUR
TIGRfam:TIGR01179TIGRFAMs:TIGR01179TMHMM:TMhelixUniGene:At.55356
unipathway:UPA00214UniPathway:UPA00797UniPathway:UPA00963UniProt:Q9FI17
Coordinates (TAIR10) chr5:+:17921515..17923643
Molecular Weight (calculated) 48348.20 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.26
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNSSGVRTQ RRSPRPLSLG GRKIITPTKF AYDHHNPDKV LDFVEMDCLE PKTKNNLTGK LLLVASLLIL AIIVISQSSS FTSPSAFSQR EEGVTHVLVT
101: GGAGYIGSHA ALRLLRDSYR VTIVDNLSRG NLGAVKTLQQ LFPQTGRLQF IYADLGDPLA VEKIFSENAF DAVMHFAAVA YVGESTLYPL KYYHNITSNT
201: LGVLEAMARH KVKKLIYSST CATYGEPEKM PITEDTPQVP INPYGKAKKM AEDMILDFSK NSDMAVMILR YFNVIGSDPG GRLGEAPRPE LREQGRISGA
301: CFDAARGFIP GLQVKGTDYK TSDGTCIRDY IDVTDLVDAH VKALEKAQPR KVGIYNVGTG KGRSVKEFVE ACKKATGVEI KVDFLPRRPG DYAEVYSDPT
401: KILKDLNWTA RFTNLQDSLQ VAWRWQKIHP HGYNSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)