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AT5G44470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G23320.1); Has 74 Blast hits to 74 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AB017065EMBL:CP002688
EnsemblPlants:AT5G44470EnsemblPlants:AT5G44470.1entrez:834474GeneID:834474
Gramene:AT5G44470.1hmmpanther:PTHR33033hmmpanther:PTHR33033:SF14KEGG:ath:AT5G44470
Pfam:PF13456PhylomeDB:Q9FI18Proteomes:UP000006548RefSeq:NP_199260.1
SMR:Q9FI18STRING:3702.AT5G44470.1TAIR:AT5G44470UniGene:At.55355
UniProt:Q9FI18
Coordinates (TAIR10) chr5:+:17918739..17919164
Molecular Weight (calculated) 12101.40 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.16
Length 108 amino acids
Sequence (TAIR10)
(BLAST)
001: MIEVTEAVEQ AVIDTREWIE NIATSEQGTS GSGLGWIIRN SHGTFMECGM SKFQGRAPVE ESECTALIWA LQSSWNLGYI KIEFDGDNLS IIRLINGKAV
101: NPRLRHYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)