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AT5G44440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: petal, embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44410.1); Has 5428 Blast hits to 5278 proteins in 865 species: Archae - 39; Bacteria - 2703; Metazoa - 4; Fungi - 1714; Plants - 701; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44440-MONOMEReggNOG:COG0277eggNOG:ENOG410IKHKEMBL:AB017065EMBL:CP002688EnsemblPlants:AT5G44440EnsemblPlants:AT5G44440.1
entrez:834471Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:834471GO:GO:0016614GO:GO:0050660Gramene:AT5G44440.1
hmmpanther:PTHR32448hmmpanther:PTHR32448:SF30HOGENOM:HOG000238933InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016167
InterPro:IPR016169KEGG:ath:AT5G44440OMA:DIFITVRPfam:PF01565Pfam:PF08031Pfscan:PS51387PhylomeDB:Q9FI21
PROSITE:PS51387Proteomes:UP000006548RefSeq:NP_199257.1SMR:Q9FI21STRING:3702.AT5G44440.1SUPFAM:SSF56176TAIR:AT5G44440
UniGene:At.43771UniProt:Q9FI21
Coordinates (TAIR10) chr5:-:17910694..17912295
Molecular Weight (calculated) 60139.90 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.28
Length 533 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSSFLFTI LLFSLNISPL VSAHGSNHED FLKCLSYRMN DNTVEPKVIH TSKDSSFFSI LDSSIQNPRF SVSETPKPVS IITPVKASDV QTVIRCAQLH
101: GIHVRTRSAG HCYEGLSYIA YNKPFAVIDL RNLRSISLDV DNRTGWVQTG ATAGELYYEI GKTTKSLAFP AGIHPTVGVG GQFSGGGYGT LLRKYGLAAD
201: NIIDALVVDA SGRILDRQAM GEDYFWAIRG GGGSSFGVIL SWKVKLVDVP STITVFKVQK TSKKEAVRII KKWQYAADKV PDDLFIRTTL ERSNKNAVHA
301: LFTGLYIGPV NNLLALMEEK FPELGLEKEG CEEMSWIESV LWFADFPKGE SLGVLTNRER TSLSFKGKDD FVQEPIPEAA IQEIWRRLEA PEARLGKIIL
401: TPFGGKMSEM AEYETPFPHR GGNLYEIQYV AYWREEEDKN KTETDKYLKW VDSVYEFMTP YVSKSPRGAY VNFKDMDLGM YLGKKKTKYE EGKSWGVKYF
501: KNNFERLVRV KTRVDPTDFF CDEQSIPLVN KVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)