AT5G44380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall; EXPRESSED IN: shoot apex, hypocotyl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44390.1); Has 6276 Blast hits to 6099 proteins in 947 species: Archae - 86; Bacteria - 3186; Metazoa - 42; Fungi - 1722; Plants - 710; Viruses - 0; Other Eukaryotes - 530 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17878873..17881369 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60619.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSKPLPTI SCIIVSVLYF SFYCITPTSS SASIQDQFIN CVKRNTHVSF PLEKTLFTPA KNVSLFNQVL ESTAQNLQFL AKSMPKPGFI FRPIHQSQVQ 101: ASIICSKKLG IHFRVRSGGH DFEALSYVSR IEKPFILLDL SKLKQINVDI ESNSAWVQPG ATLGELYYRI AEKSKIHGFP AGLCTSVGIG GYMTGGGYGT 201: LMRKYGLAGD NVLDVKMVDA NGKLLDRAAM GEDLFWAIRG GGGASFGIVL AWKIKLVPVP KTVTVFTVTK TLEQDARLKT ISKWQQISSK IIEEIHIRVV 301: LRAAGNDGNK TVTMTYLGQF LGEKGTLLKV MEKAFPELGL TQKDCTEMSW IEAALFHGGF PTGSPIEILL QLKSPLGKDY FKATSDFVKE PIPVIGLKGI 401: FKRLIEGNTT FLNWTPYGGM MSKIPESAIP FPHRNGTLFK ILYYANWLEN DKTSSRKINW IKEIYNYMAP YVSSNPRQAY VNYRDLDFGQ NKNNAKVNFI 501: EAKIWGPKYF KGNFDRLVKI KTKVDPENFF RHEQSIPPMP Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)