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AT5G44340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubulin beta chain 4
Curator
Summary (TAIR10)
beta tubulin gene
Computational
Description (TAIR10)
tubulin beta chain 4 (TUB4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-9 chain (TAIR:AT4G20890.1); Has 23619 Blast hits to 23523 proteins in 4869 species: Archae - 36; Bacteria - 51; Metazoa - 4471; Fungi - 14157; Plants - 1545; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).
Protein Annotations
BioGrid:19709eggNOG:COG5023eggNOG:KOG1375EMBL:AB011475EMBL:AY035141EMBL:AY059075EMBL:CP002688
EMBL:M21415EnsemblPlants:AT5G44340EnsemblPlants:AT5G44340.1entrez:834459Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440
GeneID:834459Genevisible:P24636GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005618GO:GO:0005794
GO:GO:0005829GO:GO:0005874GO:GO:0005886GO:GO:0007017GO:GO:0009506GO:GO:0009570GO:GO:0045298
GO:GO:0048046Gramene:AT5G44340.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF97HOGENOM:HOG000165710InParanoid:P24636IntAct:P24636
InterPro:IPR000217InterPro:IPR002453InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838InterPro:IPR017975InterPro:IPR018316
InterPro:IPR023123iPTMnet:P24636KEGG:ath:AT5G44340KO:K07375ncoils:CoilOMA:TPPPHIFPANTHER:PTHR11588
PaxDb:P24636Pfam:P24636Pfam:PF00091Pfam:PF03953PhylomeDB:P24636PIR:S68122PRIDE:P24636
PRINTS:PR01161PRINTS:PR01163PRO:PR:P24636PROSITE:PS00227PROSITE:PS00228ProteinModelPortal:P24636Proteomes:UP000006548
RefSeq:NP_199247.1scanprosite:PS00227scanprosite:PS00228SMART:SM00864SMART:SM00865SMR:P24636STRING:3702.AT5G44340.1
SUPFAM:SSF52490SUPFAM:SSF55307TAIR:AT5G44340tair10-symbols:TUB4UniGene:At.47572UniGene:At.66973UniGene:At.70628
UniGene:At.74833UniProt:P24636
Coordinates (TAIR10) chr5:-:17859442..17860994
Molecular Weight (calculated) 49825.90 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.35
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)