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AT5G44310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.771
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein (LEA) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein (LEA) family protein; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT4G21020.1); Has 48363 Blast hits to 24499 proteins in 2419 species: Archae - 560; Bacteria - 15441; Metazoa - 12035; Fungi - 3407; Plants - 3668; Viruses - 281; Other Eukaryotes - 12971 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2SYeggNOG:KOG4744EMBL:CP002688EnsemblPlants:AT5G44310
EnsemblPlants:AT5G44310.1entrez:834454ExpressionAtlas:Q3E8H9GeneID:834454
Gramene:AT5G44310.1hmmpanther:PTHR23241hmmpanther:PTHR23241:SF65HOGENOM:HOG000090577
ncoils:CoilPaxDb:Q3E8H9PhylomeDB:Q3E8H9PRIDE:Q3E8H9
ProteinModelPortal:Q3E8H9Proteomes:UP000006548RefSeq:NP_851129.1STRING:3702.AT5G44310.2
TAIR:AT5G44310UniGene:At.43190UniProt:Q3E8H9
Coordinates (TAIR10) chr5:-:17847998..17848885
Molecular Weight (calculated) 33362.00 Da
IEP (calculated) 5.17
GRAVY (calculated) -1.54
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MCEEISMVVD FQGRYDPVEK ARDSRADLAY DSKKWREESG EYAEAGKGKA HKTKEEAKDK AYDMKERTKD YAEQTKNKVN EGASRAADKA YETKEKAKDK
101: AYDVKEKTKD YAEEAKDKVN EGASRAADKA YETKEKAKDK AYDVKEKTKD FAEETKEKVN EGASRAADKA YDVKEKTKNY AEQTKDKVNE GASRAADKAE
201: ETKDKAKDYA EDSKEKAEDM AHGFKEKAQD IGEKTMDTVK DVWETAKSTA QKVTEAVVGS GEEADKARDD VDKGLEDLSK KAKENRNKDD DFKRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)