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AT5G44200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CAP-binding protein 20
Curator
Summary (TAIR10)
Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.
Computational
Description (TAIR10)
CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 1672 Blast hits to 1670 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 2; Plants - 1623; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:19693eggNOG:ENOG4111FJQeggNOG:KOG0121EMBL:AB005239EMBL:AF140219EMBL:AK227850EMBL:BT004813
EMBL:CP002688EnsemblPlants:AT5G44200EnsemblPlants:AT5G44200.1EnsemblPlants:AT5G44200.2entrez:834443Gene3D:3.30.70.330GeneID:834443
Genevisible:Q9XFD1GO:GO:0000166GO:GO:0000339GO:GO:0000394GO:GO:0000398GO:GO:0005634GO:GO:0005737
GO:GO:0005845GO:GO:0005846GO:GO:0006370GO:GO:0016070GO:GO:0031053GO:GO:0045292Gramene:AT5G44200.1
Gramene:AT5G44200.2hmmpanther:PTHR18847hmmpanther:PTHR18847:SF0HOGENOM:HOG000217589InParanoid:Q9XFD1IntAct:Q9XFD1InterPro:IPR000504
InterPro:IPR012677InterPro:IPR027157iPTMnet:Q9XFD1KEGG:ath:AT5G44200KO:K12883OMA:APPQYDRPANTHER:PTHR18847
PaxDb:Q9XFD1Pfam:PF00076Pfam:Q9XFD1Pfscan:PS50102PhylomeDB:Q9XFD1PRIDE:Q9XFD1PRO:PR:Q9XFD1
PROSITE:PS50102ProteinModelPortal:Q9XFD1Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-72086
Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187Reactome:R-ATH-72203Reactome:R-ATH-77595Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_001078705.1RefSeq:NP_199233.1SMART:SM00360SMR:Q9XFD1STRING:3702.AT5G44200.1SUPFAM:SSF54928TAIR:AT5G44200
tair10-symbols:ATCBP20tair10-symbols:CBP20UniGene:At.23549UniProt:Q9XFD1
Coordinates (TAIR10) chr5:-:17802062..17803875
Molecular Weight (calculated) 29610.80 Da
IEP (calculated) 7.49
GRAVY (calculated) -1.33
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLFKEQAK LSAYRDRRFS GTQEEFDEAL RASTTVYIGN VSFYTTEEQL YELFSRAGEI KKIIMGLDKN TKTPCGFCFV LFYSREDTED AVKYISGTIL
101: DDRPIRVDFD WGFQEGRQWG RGRSGGQVRD EYRTDYDPAR GGYGKLVQKE LEAQRQLVDY GTGSLGAYPQ AAPTNYGNGR RGGGNYGQGG QNRHGRGDYH
201: RKRQRDDDRY GRDNSRRNTD HESRRDTDSD MRPEKNPRFR ESGDSDDDGE DDRKRRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)