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AT5G44190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GOLDEN2-like 2
Curator
Summary (TAIR10)
Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
Computational
Description (TAIR10)
GOLDEN2-like 2 (GLK2); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GBF's pro-rich region-interacting factor 1 (TAIR:AT2G20570.1); Has 1672 Blast hits to 1670 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 2; Plants - 1623; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:19692eggNOG:ENOG410IH7KeggNOG:ENOG4111SK7EMBL:AB005239EMBL:AB062490EMBL:AY026773EMBL:AY028368
EMBL:AY050386EMBL:AY124819EMBL:CP002688EnsemblPlants:AT5G44190EnsemblPlants:AT5G44190.1entrez:834442Gene3D:1.10.10.60
GeneID:834442Genevisible:Q9FFH0GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009658
GO:GO:0009910GO:GO:0010380GO:GO:0045893GO:GO:1900056Gramene:AT5G44190.1hmmpanther:PTHR31312hmmpanther:PTHR31312:SF1
HOGENOM:HOG000237698InParanoid:Q9FFH0IntAct:Q9FFH0InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT5G44190OMA:KPKVDWTPaxDb:Q9FFH0Pfam:PF00249Pfam:Q9FFH0Pfscan:PS51294PhylomeDB:Q9FFH0
PRIDE:Q9FFH0PRO:PR:Q9FFH0PROSITE:PS51294ProteinModelPortal:Q9FFH0Proteomes:UP000006548RefSeq:NP_199232.1SMR:Q9FFH0
STRING:3702.AT5G44190.1SUPFAM:SSF46689TAIR:AT5G44190tair10-symbols:ATGLK2tair10-symbols:GLK2tair10-symbols:GPRI2TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.19638UniProt:Q9FFH0
Coordinates (TAIR10) chr5:+:17798435..17800647
Molecular Weight (calculated) 42169.60 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.62
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)