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AT5G44160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink).
Protein Annotations
BioGrid:19689eggNOG:COG5048eggNOG:KOG1721EMBL:AB005239EMBL:AY037202EMBL:BT002685EMBL:CP002688
EnsemblPlants:AT5G44160EnsemblPlants:AT5G44160.1entrez:834439Gene3D:3.30.160.60GeneID:834439Genevisible:Q9FFH3GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010260GO:GO:0045893GO:GO:0046872
GO:GO:0048510GO:GO:0048573Gramene:AT5G44160.1hmmpanther:PTHR10593hmmpanther:PTHR10593:SF31HOGENOM:HOG000237608InParanoid:Q9FFH3
IntAct:Q9FFH3InterPro:IPR007087InterPro:IPR013087KEGG:ath:AT5G44160OMA:THDNSIEPaxDb:Q9FFH3Pfam:Q9FFH3
Pfscan:PS50157PhylomeDB:Q9FFH3PRO:PR:Q9FFH3PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9FFH3Proteomes:UP000006548
RefSeq:NP_199229.1scanprosite:PS00028SMR:Q9FFH3STRING:3702.AT5G44160.1SUPFAM:SSF57667TAIR:AT5G44160tair10-symbols:NUC
UniGene:At.8713UniProt:Q9FFH3
Coordinates (TAIR10) chr5:+:17773091..17775513
Molecular Weight (calculated) 51191.80 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.62
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSEVLQTIS SGSGFAQPQS SSTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPTTL MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK
101: EVRKRVYVCP EKTCVHHHSS RALGDLTGIK KHFCRKHGEK KWTCEKCAKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFITHRAFC DALAEETAKI
201: NAVSHLNGLA AAGAPGSVNL NYQYLMGTFI PPLQPFVPQP QTNPNHHHQH FQPPTSSSLS LWMGQDIAPP QPQPDYDWVF GNAKAASACI DNNNTHDEQI
301: TQNANASLTT TTTLSAPSLF SSDQPQNANA NSNVNMSATA LLQKAAEIGA TSTTTAATND PSTFLQSFPL KSTDQTTSYD SGEKFFALFG SNNNIGLMSR
401: SHDHQEIENA RNDVTVASAL DELQNYPWKR RRVDGGGEVG GGGQTRDFLG VGVQTLCHPS SINGWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)