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AT5G44090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G03960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19682eggNOG:ENOG410XRBKeggNOG:KOG2562EMBL:AB005239EMBL:AF165429EMBL:AY099553EMBL:AY462121
EMBL:BT002124EMBL:CP002688EnsemblPlants:AT5G44090EnsemblPlants:AT5G44090.1entrez:834432Gene3D:1.10.238.10GeneID:834432
Genevisible:Q9XGR4GO:GO:0005509GO:GO:0005739Gramene:AT5G44090.1hmmpanther:PTHR14095hmmpanther:PTHR14095:SF6HOGENOM:HOG000265086
InParanoid:Q9XGR4IntAct:Q9XGR4InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT5G44090KO:K11583
OMA:RYCIEEYPaxDb:Q9XGR4Pfam:PF13499Pfam:Q9XGR4Pfscan:PS50222PhylomeDB:Q9XGR4PRIDE:Q9XGR4
PRO:PR:Q9XGR4PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9XGR4Proteomes:UP000006548Reactome:R-ATH-113501Reactome:R-ATH-69231
RefSeq:NP_199222.1scanprosite:PS00018SMR:Q9XGR4STRING:3702.AT5G44090.1SUPFAM:SSF47473TAIR:AT5G44090UniGene:At.8707
UniProt:Q9XGR4
Coordinates (TAIR10) chr5:-:17743264..17747909
Molecular Weight (calculated) 62328.20 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.38
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDGGNDVQ ILDPELLQLP GLSPVSLKEN PHIAEELFSQ WLSLPETGRL VKSLIDDTKS STPVSVSKNC TSLNVACGSA LPSVFLNSGT PPLSPRGSPG
101: SPRFSRQKTS PSLQSPLKSV REPKRQLIPQ FYFQHGRPPA KELREQCISM VDQFFSNYID GLHMDEFKSI TKEVCKLPSF LSSVLFRKID TSGTGIVTRD
201: AFIKYWVDGH MLAMDVASQI YNILRQPGCK YLRQADFKPV LDELLTTHPG LEFLRNTPEF QERYAETVIY RIFYYINRSG TGCITLRELK RGNLITAMQQ
301: VDEEDDINKV IRYFSYEHFY VIYCRFWELD GDHDFLIDKE NLIKYGNHAL TYRIVDRIFS QVPRKFTSKV EGKMSYEDFA YFILAEEDKS SEPSLEYWFK
401: CIDLDGDGVI TPNEMQFFYE EQLHRMECIT QEPVLFEDIL CQIFDMIKPE KENCITLQDL KASKLSGNIF NILFNLNKFM AFETRDPFLI RQERENPTLT
501: EWDRFAQREY VRLSMEEDVE EVSNGSADVW DEPLESPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)