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AT5G43990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SET-domain containing protein lysine methyltransferase family protein
Curator
Summary (TAIR10)
Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
Computational
Description (TAIR10)
SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43990-MONOMERBioCyc:ARA:GQT-242-MONOMERBioCyc:ARA:GQT-243-MONOMERBioCyc:ARA:GQT-244-MONOMERBioCyc:ARA:GQT-245-MONOMERBioGrid:19672eggNOG:COG2940
eggNOG:KOG1082EMBL:AB006703EMBL:AK230468EMBL:AY045576EMBL:CP002688EnsemblPlants:AT5G43990EnsemblPlants:AT5G43990.1
EnsemblPlants:AT5G43990.3EnsemblPlants:AT5G43990.4entrez:834422ExpressionAtlas:Q9FNC7GeneID:834422Genevisible:Q9FNC7GO:GO:0005634
GO:GO:0005694GO:GO:0008270GO:GO:0018024GO:GO:0031047HOGENOM:HOG000029715InParanoid:Q9FNC7InterPro:IPR001214
InterPro:IPR007728InterPro:IPR018848InterPro:IPR025776KEGG:ath:AT5G43990PaxDb:Q9FNC7Pfam:PF00856Pfam:PF05033
Pfam:PF10440Pfam:Q9FNC7Pfscan:PS50280Pfscan:PS51580PhylomeDB:Q9FNC7PRIDE:Q9FNC7PRO:PR:Q9FNC7
PROSITE:PS50280PROSITE:PS51580ProteinModelPortal:Q9FNC7Proteomes:UP000006548RefSeq:NP_001078702.1RefSeq:NP_001078703.1RefSeq:NP_568631.1
SMART:SM00317SMART:SM00468SMR:Q9FNC7STRING:3702.AT5G43990.2SUPFAM:SSF82199TAIR:AT5G43990tair10-symbols:SDG18
tair10-symbols:SUVR2UniGene:At.26569UniProt:Q9FNC7
Coordinates (TAIR10) chr5:+:17698523..17701733
Molecular Weight (calculated) 79367.00 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.38
Length 717 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPNLHIKKA FMAMRAMGIE DARVKPVLKN LLALYEKNWE LIAEDNYRVL ADAIFDSHED QAIQESEEKK ADEVKEDEGC AAEVDRGKKK LHESIEDDED
101: VMAESDRPLK RLRRRGEGGS ALASPSLGSP TLEGPSINDE ENAPILLPYH PVPIENDHDA GELILTKVEP ITNMPLSSIP DSVDRGDSSM LEIDKSNGHV
201: EEKAGETVST ADGTTNDISP TTVARFSDHK LAATIEEPPA LELASSASGE VKINLSFAPA TGGSNPHLPS MEELRRAMEE KCLRSYKILD PNFSVLGFMN
301: DICSCYLDLA TNGRDSANQL PKNLPFVTTN IDALKKSAAR MAYTSQASND VVEICSNEHM RDAENGAVGD SMALVVVPEC QLSADEWRLI SSVGDISLGK
401: ETVEIPWVNE VNDKVPPVFH YIAQSLVYQD AAVKFSLGNI RDDQCCSSCC GDCLAPSMAC RCATAFNGFA YTVDGLLQED FLEQCISEAR DPRKQMLLYC
501: KECPLEKAKK EVILEPCKGH LKRKAIKECW SKCGCMKNCG NRVVQQGIHN KLQVFFTPNG RGWGLRTLEK LPKGAFVCEL AGEILTIPEL FQRISDRPTS
601: PVILDAYWGS EDISGDDKAL SLEGTHYGNI SRFINHRCLD ANLIEIPVHA ETTDSHYYHL AFFTTREIDA MEELTWDYGV PFNQDVFPTS PFHCQCGSDF
701: CRVRKQISKG KNVKKRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)