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AT5G43930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G04140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ11eggNOG:ENOG410ZUDQEMBL:AK316910EMBL:AK316965EMBL:AY054527EMBL:AY064620EMBL:CP002688
EnsemblPlants:AT5G43930EnsemblPlants:AT5G43930.1EnsemblPlants:AT5G43930.2EnsemblPlants:AT5G43930.3entrez:834415ExpressionAtlas:Q93XZ2Gene3D:2.130.10.10
GeneID:834415Gramene:AT5G43930.1Gramene:AT5G43930.2Gramene:AT5G43930.3hmmpanther:PTHR22874hmmpanther:PTHR22874:SF4InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775KEGG:ath:AT5G43930KO:K17985Pfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q93XZ2PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-1632852
RefSeq:NP_001032006.1RefSeq:NP_001032007.1RefSeq:NP_199206.1scanprosite:PS00678SMART:SM00320SMR:Q93XZ2STRING:3702.AT5G43930.4
SUPFAM:SSF50978TAIR:AT5G43930UniGene:At.7295UniProt:Q93XZ2
Coordinates (TAIR10) chr5:+:17677047..17680577
Molecular Weight (calculated) 78942.10 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.34
Length 726 amino acids
Sequence (TAIR10)
(BLAST)
001: MTQSICSSSQ DQSSSPRSLI TPRKSATKFH RRRGRSVFNM LVQREMSPKA KFVPRKRWGK SRWYTDSSCG TNNESMKETG QSLTSWVEAE SLQHLSAKYC
101: PLGAPPRSTI AAAFSTDGRT LASTHGDHTV KIIDCETGNC LKVLTGHRRT PWVVRFHPHH SEIVASGSLD LEVRLWNTTT SECIRSHLFY RPIASIAFHA
201: EGELLAVASG HKLHMWHYNR RGEGSSPTVV LKTRRSLRAV HFHPHGAPLL LTAEVNEIDS LDSSMSRATS MGYLRYPPPA ILFTSTESNQ TSLAAENENR
301: TSSPPLPLAT SSGPSGPNSV PGNSPSNIFL TRAGDRTSPA VDGMDVDEAQ PVGRNGIPSQ VSNRSDFPEL GQIRQLFHFR DRVSWELPFL QGWLMAQGHG
401: VANPVVTPTG SSNHGISAPS STASLEAAVA LLEIPSGVNL HAVSRRGGAQ EQTSQPQFSR TGLPEGVSSR NTQHGSDAQP VVNRVQSELA TSIAASAAAA
501: AAAELPCTVK LRMWSHDIKD PYAQLKSDRC LFTIPHAVLC SEMGAHYSPC GRYLAACVAC VFPHGEIDPG LQTQAQQDSG LATSPTRHPV TAHQVIYELR
601: VYSLQKESFG SVLVSRAIRA AHCLTSIQFS PTSEHILLAY GRRHGSLLRS IVSDGETTSH FFTVLEIYRV SDMELVRVLP SSEDEVNVAC FHPSPGGGLV
701: YGTKEGKLRI FQYNTAATSN FTGPNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)