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AT5G43910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.896
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G28706.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111F4QeggNOG:KOG2947EMBL:BT004142EMBL:BT005696EMBL:CP002688EnsemblPlants:AT5G43910EnsemblPlants:AT5G43910.1
entrez:834413ExpressionAtlas:Q84JM3Gene3D:3.40.1190.20GeneID:834413GO:GO:0004747GO:GO:0006014Gramene:AT5G43910.1
hmmpanther:PTHR10584hmmpanther:PTHR10584:SF190HOGENOM:HOG000006181InterPro:IPR002139InterPro:IPR011611InterPro:IPR029056KEGG:ath:AT5G43910
Pfam:PF00294PhylomeDB:Q84JM3PRINTS:PR00990Proteomes:UP000006548RefSeq:NP_199204.3SMR:Q84JM3STRING:3702.AT5G43910.2
SUPFAM:SSF53613TAIR:AT5G43910UniGene:At.30094UniProt:Q84JM3
Coordinates (TAIR10) chr5:-:17667942..17670085
Molecular Weight (calculated) 30897.00 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.03
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSCSDEAIP GQPIVLGCGQ LCLDYLVTVA SFPIPDQKIR GTSFKVQGGG NTGNALTCVA RLGLPCRILA KVADDSHGRY MVEELESSGV DTSFCMSAKD
101: GASHFNYVIV DNQTNTRTCI YTPGYPPLLP DDLTESLLLD VLDGVRVLYV NGRSREAELL LAQKAHSKNI PILINAEKKR TGLDELIDLA DYAICSTNFP
201: QEWTGAPSSP SALLSMLIRL PKLKFVIMTL GEHGCVMLER CSSEVSGSEE ETDIDELHES LKQSTDFTSV LPVCNSSGML QGDWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)