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AT5G43880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3741)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3741); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWUNeggNOG:ENOG41104KJEMBL:AP000368EMBL:AY128401EMBL:CP002688EnsemblPlants:AT5G43880EnsemblPlants:AT5G43880.1
entrez:834410GeneID:834410GO:GO:0016020Gramene:AT5G43880.1hmmpanther:PTHR21726hmmpanther:PTHR21726:SF36HOGENOM:HOG000239264
InterPro:IPR022212InterPro:IPR025486InterPro:IPR032795KEGG:ath:AT5G43880ncoils:CoilOMA:ASKERSYPfam:PF12552
Pfam:PF14309Pfam:PF14383PhylomeDB:Q9LKC1Proteomes:UP000006548RefSeq:NP_199201.1STRING:3702.AT5G43880.1TAIR:AT5G43880
UniGene:At.30096UniProt:Q9LKC1
Coordinates (TAIR10) chr5:-:17639975..17642848
Molecular Weight (calculated) 93496.70 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.69
Length 836 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKQRRRNVQ AHGCLARMVN LFDFGTVGNG KKLLTEKPHF DHGSIKGNQF DQIEDKVDVR NGGVNGTPMK MLLEQEMSKE MEVKLSSTNL VAKLMGLDSF
101: PQTQSAPRSY SSKPRLKRSL SHGEYKNVYE IWQKEGELSS NGVEGLSKKK MDIVREKFLE AKRLVTDDEL RHSKEFQEAM EVLSSNKELF LEFLQESNNF
201: FSHHLHSFQS TDPPTSEKSK RITILKPSKT VADEKFGNEP AIESSRDGSK SGKGLDFFKW PVEEEYPTKQ STRIVVLKPN GQVTKASSCP TSPRGFEGRE
301: SRDVARRVKS QILKEETLQS SVFSNGYICD DSSLNDYADS EIMSPVSRHS WDYINKYDSP FSSSPFSRAS GSPESSSVCR EAKKRLSERW ALMAAANENL
401: QEAKVIEKKG SNISLGDMLA LPDLREDLIT EEEETSNGNE QEGPKVSASC FDGNFSREEG KLKPPKGLTR SKSLPESSTS LGHKSLDSSN KSKSSRVPEE
501: LTKSKSLKWS LKGKVSNFLF SRSKKASKER SYEESPEILD SRCNNEYDAS VSARIMTSRE GGLSITKPTI FGNSSEWRDE PSPISVLETS FDEEDGIFFN
601: SSILNRSSSS LEREMKSNLL GKSPPIGSIG RTLSFDDSTV ARCYSSKRST TSARDEEEDL RLLINTLLSA ADLDAISDNL LSKWHSSESP LDPSLRNSYA
701: DSTEQKRLGS NVKNLVFDLV NTLLLELTPS YLGPRSSPMI LSGKPLGVYV INRMQECLTG NGRVEDRWWD EDGDLSSLAV NKVVRIEVAE IGSQESLRLE
801: MDSMGEELEL KLLEELVEEA LMDLSEQSKL FIPSIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)