AT5G43880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.491 cytosol 0.309 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3741) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3741); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17639975..17642848 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93496.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 836 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNKQRRRNVQ AHGCLARMVN LFDFGTVGNG KKLLTEKPHF DHGSIKGNQF DQIEDKVDVR NGGVNGTPMK MLLEQEMSKE MEVKLSSTNL VAKLMGLDSF 101: PQTQSAPRSY SSKPRLKRSL SHGEYKNVYE IWQKEGELSS NGVEGLSKKK MDIVREKFLE AKRLVTDDEL RHSKEFQEAM EVLSSNKELF LEFLQESNNF 201: FSHHLHSFQS TDPPTSEKSK RITILKPSKT VADEKFGNEP AIESSRDGSK SGKGLDFFKW PVEEEYPTKQ STRIVVLKPN GQVTKASSCP TSPRGFEGRE 301: SRDVARRVKS QILKEETLQS SVFSNGYICD DSSLNDYADS EIMSPVSRHS WDYINKYDSP FSSSPFSRAS GSPESSSVCR EAKKRLSERW ALMAAANENL 401: QEAKVIEKKG SNISLGDMLA LPDLREDLIT EEEETSNGNE QEGPKVSASC FDGNFSREEG KLKPPKGLTR SKSLPESSTS LGHKSLDSSN KSKSSRVPEE 501: LTKSKSLKWS LKGKVSNFLF SRSKKASKER SYEESPEILD SRCNNEYDAS VSARIMTSRE GGLSITKPTI FGNSSEWRDE PSPISVLETS FDEEDGIFFN 601: SSILNRSSSS LEREMKSNLL GKSPPIGSIG RTLSFDDSTV ARCYSSKRST TSARDEEEDL RLLINTLLSA ADLDAISDNL LSKWHSSESP LDPSLRNSYA 701: DSTEQKRLGS NVKNLVFDLV NTLLLELTPS YLGPRSSPMI LSGKPLGVYV INRMQECLTG NGRVEDRWWD EDGDLSSLAV NKVVRIEVAE IGSQESLRLE 801: MDSMGEELEL KLLEELVEEA LMDLSEQSKL FIPSIC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)