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AT5G43822.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026651EMBL:BT010664EMBL:BT010957EMBL:CP002688EnsemblPlants:AT5G43822
EnsemblPlants:AT5G43822.1entrez:7922354GeneID:7922354Genevisible:Q6NPG7Gramene:AT5G43822.1hmmpanther:PTHR37904hmmpanther:PTHR37904:SF1
HOGENOM:HOG000006397InterPro:IPR029159KEGG:ath:AT5G43822ncoils:CoilOMA:VEQPNIPPaxDb:Q6NPG7Pfam:PF15011
Pfam:Q6NPG7PhylomeDB:Q6NPG7PRIDE:Q6NPG7PRO:PR:Q6NPG7Proteomes:UP000006548RefSeq:NP_001154759.1STRING:3702.AT5G43822.1
TAIR:AT5G43822UniGene:At.30100UniProt:Q6NPG7
Coordinates (TAIR10) chr5:+:17620830..17621868
Molecular Weight (calculated) 22720.70 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.32
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVIRKWQQ KFRKGKEEME KWEALQVRWV SLFRNASSII QRLQEMQNHG SYGALRCLKG IEDAVVQQQM GQLESLLRSM KNVMEEFWGC VLTFEKLHRD
101: GLQLREIESS KRRVEERIGV KPCITDCLEG LSILYDMHQS EYHLKSSILS VLSCLILKPS PGDLNALQYL VVDQPNIPKD EVQHIFDVIF AEEIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)