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AT5G43790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.965
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G37380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026651EMBL:AY124001EMBL:CP002688EnsemblPlants:AT5G43790EnsemblPlants:AT5G43790.1
entrez:834401GeneID:834401Genevisible:Q9FG85Gramene:AT5G43790.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF685HOGENOM:HOG000237569
InParanoid:Q9FG85InterPro:IPR002885KEGG:ath:AT5G43790OMA:QTHLAFSPaxDb:Q9FG85Pfam:PF01535Pfam:PF13041
Pfam:Q9FG85Pfscan:PS51375PhylomeDB:Q9FG85PRIDE:Q9FG85PRO:PR:Q9FG85PROSITE:PS51375ProteinModelPortal:Q9FG85
Proteomes:UP000006548RefSeq:NP_199192.1SMR:Q9FG85STRING:3702.AT5G43790.1TAIR:AT5G43790TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.9039UniProt:Q9FG85
Coordinates (TAIR10) chr5:-:17592099..17593481
Molecular Weight (calculated) 51647.20 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.09
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSPSTSKNH RCLNLISKCK SLQNLKQIHA QIITIGLSHH TYPLSKLLHL SSTVCLSYAL SILRQIPNPS VFLYNTLISS IVSNHNSTQT HLAFSLYDQI
101: LSSRSNFVRP NEFTYPSLFK ASGFDAQWHR HGRALHAHVL KFLEPVNHDR FVQAALVGFY ANCGKLREAR SLFERIREPD LATWNTLLAA YANSEEIDSD
201: EEVLLLFMRM QVRPNELSLV ALIKSCANLG EFVRGVWAHV YVLKNNLTLN QFVGTSLIDL YSKCGCLSFA RKVFDEMSQR DVSCYNAMIR GLAVHGFGQE
301: GIELYKSLIS QGLVPDSATF VVTISACSHS GLVDEGLQIF NSMKAVYGIE PKVEHYGCLV DLLGRSGRLE EAEECIKKMP VKPNATLWRS FLGSSQTHGD
401: FERGEIALKH LLGLEFENSG NYVLLSNIYA GVNRWTDVEK TRELMKDHRV NKSPGISTLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)