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AT5G43760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.909
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 20
Curator
Summary (TAIR10)
Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 20 (KCS20); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 2 (TAIR:AT1G04220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43760-MONOMERBioGrid:19648ChEMBL:CHEMBL2242734EC:2.3.1.199eggNOG:ENOG410IHMWeggNOG:ENOG410Y5VHEMBL:AB026651
EMBL:AF424620EMBL:AY035030EMBL:AY150469EMBL:CP002688EnsemblPlants:AT5G43760EnsemblPlants:AT5G43760.1entrez:834398
Gene3D:3.40.47.10GeneID:834398Genevisible:Q9FG87GO:GO:0006633GO:GO:0009409GO:GO:0009416GO:GO:0009922
GO:GO:0016021Gramene:AT5G43760.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561hmmpanther:PTHR31561:SF25HOGENOM:HOG000238893
InParanoid:Q9FG87InterPro:IPR012392InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199
KEGG:ath:AT5G43760KO:K15397OMA:WMDEVHEPANTHER:PTHR31561PaxDb:Q9FG87Pfam:PF08392Pfam:PF08541
Pfam:Q9FG87PhylomeDB:Q9FG87PIRSF:PIRSF036417PRIDE:Q9FG87PRO:PR:Q9FG87ProteinModelPortal:Q9FG87Proteomes:UP000006548
RefSeq:NP_199189.1SMR:Q9FG87STRING:3702.AT5G43760.1SUPFAM:SSF53901TAIR:AT5G43760tair10-symbols:KCS20TMHMM:TMhelix
UniGene:At.9037UniPathway:UPA00094UniProt:Q9FG87
Coordinates (TAIR10) chr5:+:17585903..17588486
Molecular Weight (calculated) 59309.90 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.10
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHNQNQPHR PVPVHVTNAE PNPNPNNLPN FLLSVRLKYV KLGYHYLISN ALYILLLPLL AATIANLSSF TINDLSLLYN TLRFHFLSAT LATALLISLS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)