AT5G43745.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1012) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1012); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17569435..17574954 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92215.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.45 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 817 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMVAVQLFTW KPLVLLPSQS SRLDRFASFN RSLSLKSLPL GGIGSFRCPG TFKVKSQRTG DTEPSSSVNL NDFSSILHKS LPYKVVIGCI PLYAVFRIAQ 101: KICQELPRLV QNSVGAGLPF ACASNSLPTP LKLDVSFPSF QDIRWGLARF LYLFNIQLEK NIGTFLVALM IACVSFVIIG GLLFFKFRKD LPLEDCLWEA 201: WACLISSSTH LKQKTRIERV IGFVLAIWGI LFYSRLLSTM TEQFRYNMTK LREGAQMQVL EADHIIICGI NSHLPFILKQ LNSYHEHAVR LGTATARKQR 301: LLLMSDTPRK QMDKLAEAYS KDFNHIDILT KSCSLNLTKS FERAAASMAR AIIILPTKGD RYEVDTDAFL SVLALQPIQK MESIPTIVEV SSPNTYDLLK 401: SISGLKVEPV ENVTSKLFVQ CSRQKDLIKI YRHLLNYSKN VFNLCSFPNL VGTKYRQLRL GFQEVVVCGL LRDGKVNFHP NDNEELMETD KLLFIAPLNW 501: KKKQLLYTDM KLENITVPTD TRKQVFEKKR SRLSKIIMRP RKSLSKGSDS VKGPTESILL LGWRGDVVQM IEEFDNYLGP GSSMEILSDV SLEDRRRVGD 601: SIGSVKIKNI QVSHKVGNPL NYDTLKQTIM RMKSKYRKGK NIPLTILVIS DRDWLLGDPS RADKQSAYSL LLAESICNKL GVKVHNLASE IVDSKLGKQI 701: TGLKPSLTFI AAEEVMSLVT AQVAENSELN EVWKDILDAD GDEIYVKDVE LYMKEGENPS FTELSERAWL RREVAIGYIK GGKKMINPVP KNEPLSLEMD 801: DSLIVISELE GDQPITL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)