suba logo
AT5G43710.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 47 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT1G27520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43710-MONOMERCAZy:GH47EC:3.2.1.-eggNOG:ENOG410XS6FeggNOG:KOG2429EMBL:AB026651EMBL:AF370128
EMBL:AY040044EMBL:CP002688EnsemblPlants:AT5G43710EnsemblPlants:AT5G43710.1entrez:834391Gene3D:1.50.10.50GeneID:834391
Genevisible:Q9FG93GO:GO:0004559GO:GO:0004571GO:GO:0005509GO:GO:0005783GO:GO:0005789GO:GO:0006491
GO:GO:0016021GO:GO:0030433GO:GO:0030968GO:GO:0097466Gramene:AT5G43710.1hmmpanther:PTHR11742hmmpanther:PTHR11742:SF25
HOGENOM:HOG000004833InParanoid:Q9FG93InterPro:IPR001382KEGG:00510+3.2.1.113KEGG:00513+3.2.1.113KEGG:ath:AT5G43710KO:K10085
OMA:WKRYGFTPaxDb:Q9FG93Pfam:PF01532Pfam:Q9FG93PhylomeDB:Q9FG93PRIDE:Q9FG93PRINTS:PR00747
PRO:PR:Q9FG93ProteinModelPortal:Q9FG93Proteomes:UP000006548Reactome:R-ATH-901032RefSeq:NP_199184.1SMR:Q9FG93STRING:3702.AT5G43710.1
SUPFAM:SSF48225TAIR:AT5G43710TMHMM:TMhelixUniGene:At.23954UniPathway:UPA00378UniProt:Q9FG93
Coordinates (TAIR10) chr5:-:17552252..17556523
Molecular Weight (calculated) 70099.50 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.24
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNFKWLLF AILISLTFSG FVLHHGVLAE SVKPDEAKQL RDEVRGMFYH AFDGYMNNAF PLDELRPLSC QGEDTLGGYA LTLIDSLDTL ALLGDRERFT
101: SSVEWIGKNL QFNINKTVSV FETTIRVLGG LLSAHLIASD YATGMRIPSY NNELLVLAEN LARRMLPAFD TPTGIPFGSV NLMYGVDKHE SKITSTAGGG
201: TLSLEFGVLS RLTNDPVFEQ VAKNAVRGLW ARRSNLDLVG AHINVFTGEW TQKDAGIGTS IDSFYEYLLK AYILFGDEEY LYIFQEAYRS AMQYLHKDPW
301: YVEVNMDSAA IVWPVFNSLQ AFWPGLQVLA GDVDPAIRTH TAFFSVWKRY GFTPEGFNLA TLSVQYGQKS YPLRPELIES TYWLYKATRD PRYLDAGRDF
401: VASLQYGAKC PCGYCHITDV ELHKQEDHME SFFLAETVKY LWLLFDLAVD SDNLVDNGPY KYIFSTEGHL LPITPQISLA REHCSYFGGY CPSNSTKLEQ
501: EVLGEDSSND DHSNDYPYHE SFPVTGLIKG LCPGLTHAQK YGFSYVLPEK TDREDVNQPK PVVTSSSIVL ISDQTVEKRP QEEEGFTSQS EPIMTISGGS
601: SNDQTGQELT LLESETDDQR SYSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)