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AT5G43560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TRAF-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 12918 Blast hits to 9295 proteins in 852 species: Archae - 42; Bacteria - 1359; Metazoa - 4426; Fungi - 1772; Plants - 1152; Viruses - 72; Other Eukaryotes - 4095 (source: NCBI BLink).
Protein Annotations
BioGrid:19626eggNOG:ENOG410IE0PeggNOG:ENOG410ZKXJEMBL:AB016875EMBL:AK226901EMBL:AK317030EMBL:AY078956
EMBL:CP002688EnsemblPlants:AT5G43560EnsemblPlants:AT5G43560.1EnsemblPlants:AT5G43560.2entrez:834376Gene3D:2.60.210.10GeneID:834376
Genevisible:Q8RY18GO:GO:0043424hmmpanther:PTHR26379hmmpanther:PTHR26379:SF164HOGENOM:HOG000238326InParanoid:Q8RY18IntAct:Q8RY18
InterPro:IPR002083InterPro:IPR008974iPTMnet:Q8RY18KEGG:ath:AT5G43560OMA:HIQKPESPaxDb:Q8RY18Pfam:PF00917
Pfam:Q8RY18Pfscan:PS50144PhylomeDB:Q8RY18PRIDE:Q8RY18PRO:PR:Q8RY18PROSITE:PS50144ProteinModelPortal:Q8RY18
Proteomes:UP000006548RefSeq:NP_199169.1RefSeq:NP_851125.1SMART:SM00061SMR:Q8RY18STRING:3702.AT5G43560.1SUPFAM:SSF49599
TAIR:AT5G43560UniGene:At.43517UniProt:Q8RY18
Coordinates (TAIR10) chr5:+:17501043..17505526
Molecular Weight (calculated) 117455.00 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.81
Length 1055 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)