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AT5G43520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.515
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G44380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBT5eggNOG:ENOG410Z3DCEMBL:AB016875EMBL:CP002688
EnsemblPlants:AT5G43520EnsemblPlants:AT5G43520.1entrez:834372GeneID:834372
Gramene:AT5G43520.1hmmpanther:PTHR13871hmmpanther:PTHR13871:SF42HOGENOM:HOG000093099
InterPro:IPR004146KEGG:ath:AT5G43520ncoils:CoilOMA:EDETACS
Pfam:PF03107PhylomeDB:Q9FIY8Proteomes:UP000006548RefSeq:NP_199165.1
SMR:Q9FIY8STRING:3702.AT5G43520.1SUPFAM:SSF57889TAIR:AT5G43520
UniGene:At.22944UniProt:Q9FIY8
Coordinates (TAIR10) chr5:-:17485439..17486191
Molecular Weight (calculated) 28653.90 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.87
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRKPKAKP VNRQSVRHPS HNHPLRVFKA KEEDETACSG CELELTGQAF KCIKSECDYF LHKSCFDLPS ETNNKSHQDH PLTLLHSPPD DRSVYTCDAC
101: DQYGSGFSYH CSNCNYSLHV GCAFIPETVD REDHEHPLTL LYCTPCKGRE DTYFTCSACD ETISEDLWMY YCKDCDYGTH LHSCAAYEDQ GKEEEDEDEE
201: GEASSPASRI KSLMKAQDEM AAMQLEARIE NDARNAALDL WDEPKRRYYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)