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AT5G43460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HR-like lesion-inducing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HR-like lesion-inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT1G04340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYSZeggNOG:ENOG410YQTQEMBL:AB025638EMBL:AY057586EMBL:BT010160EMBL:CP002688EnsemblPlants:AT5G43460
EnsemblPlants:AT5G43460.1entrez:834366GeneID:834366GO:GO:0005783GO:GO:0016021Gramene:AT5G43460.1hmmpanther:PTHR31474
hmmpanther:PTHR31474:SF4IntAct:Q9LSW5InterPro:IPR008637KEGG:ath:AT5G43460OMA:GMKNSTPPfam:PF05514PhylomeDB:Q9LSW5
Proteomes:UP000006548RefSeq:NP_199159.1STRING:3702.AT5G43460.1TAIR:AT5G43460TMHMM:TMhelixUniGene:At.7158UniProt:Q9LSW5
Coordinates (TAIR10) chr5:+:17460007..17461492
Molecular Weight (calculated) 16904.10 Da
IEP (calculated) 10.66
GRAVY (calculated) 0.51
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDGGPA AKELAPKLDL VKAHLSSRLG VTLPKIEVRQ VVATIIALKG VGGLLFVIGN TFGAYLLASY LVVFGPILYD
101: FYNYGPQERH FSLLLTEFLQ SVALFGALLF FIGMKNSTPA KKNLKKRTPK PKAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)