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AT5G43440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.940
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to ACC oxidase
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G43450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43440-MONOMEREC:1.14.-.-eggNOG:COG3491eggNOG:KOG0143EMBL:AB025638EMBL:AK226856EMBL:AY056810
EMBL:AY143873EMBL:CP002688EnsemblPlants:AT5G43440EnsemblPlants:AT5G43440.1entrez:834364Gene3D:2.60.120.330GeneID:834364
Genevisible:Q9LSW7GO:GO:0009815GO:GO:0046872hmmpanther:PTHR10209hmmpanther:PTHR10209:SF122HOGENOM:HOG000276735InParanoid:Q9LSW7
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT5G43440OMA:FAYNTNFPaxDb:Q9LSW7Pfam:PF03171
Pfam:PF14226Pfam:Q9LSW7Pfscan:PS51471PhylomeDB:Q9LSW7PRIDE:Q9LSW7PRO:PR:Q9LSW7PROSITE:PS51471
ProteinModelPortal:Q9LSW7Proteomes:UP000006548RefSeq:NP_001078700.1RefSeq:NP_199157.1SMR:Q9LSW7STRING:3702.AT5G43440.1SUPFAM:SSF51197
TAIR:AT5G43440UniGene:At.66670UniGene:At.7156UniProt:Q9LSW7
Coordinates (TAIR10) chr5:-:17455356..17456608
Molecular Weight (calculated) 40862.20 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.12
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEKSAELVR LNELKAFVST KAGVKGLVDT KITEVPRIFH IPSSSTLSNN KPSDIFGLNL TVPIIDLGDG NTSAARNVLV SKIKEAAENW GFFQVINHGI
101: PLTVLKDIKQ GVRRFHEEDP EVKKQYFATD FNTRFAYNTN FDIHYSSPMN WKDSFTCYTC PQDPLKPEEI PLACRDVVIE YSKHVMELGG LLFQLLSEAL
201: GLDSEILKNM DCLKGLLMLC HYYPPCPQPD LTLGISKHTD NSFITILLQD QIGGLQVLHQ DSWVDVTPVP GALVISIGDF MQLITNDKFL SMEHRVRANR
301: DGPRISVACF VSSGVFPNST VYGPIKELLS DENPAKYRDI TIPEYTVGYL ASIFDGKSHL SKFRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)