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AT5G43380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : type one serine/threonine protein phosphatase 6
Curator
Summary (TAIR10)
encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.
Computational
Description (TAIR10)
type one serine/threonine protein phosphatase 6 (TOPP6); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 4 (TAIR:AT2G39840.1); Has 7151 Blast hits to 6957 proteins in 613 species: Archae - 78; Bacteria - 520; Metazoa - 2406; Fungi - 1417; Plants - 983; Viruses - 15; Other Eukaryotes - 1732 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43380-MONOMERBioCyc:ARA:GQT-2659-MONOMERBioCyc:ARA:GQT-2660-MONOMERBioGrid:19606EC:3.1.3.16eggNOG:COG0639eggNOG:KOG0374
EMBL:AB000094EMBL:AB025638EMBL:AY136464EMBL:BT002143EMBL:CP002688EMBL:U80920EnsemblPlants:AT5G43380
EnsemblPlants:AT5G43380.1entrez:834356Gene3D:3.60.21.10GeneID:834356Genevisible:O82733GO:GO:0004721GO:GO:0046872
hmmpanther:PTHR11668hmmpanther:PTHR11668:SF280HOGENOM:HOG000172697InParanoid:O82733IntAct:O82733InterPro:IPR004843InterPro:IPR006186
InterPro:IPR029052InterPro:IPR031675KEGG:ath:AT5G43380KO:K06269OMA:GFEFFANPaxDb:O82733Pfam:O82733
Pfam:PF00149Pfam:PF16891PhylomeDB:O82733PRIDE:O82733PRINTS:PR00114PRO:PR:O82733PROSITE:PS00125
ProteinModelPortal:O82733Proteomes:UP000006548RefSeq:NP_001032000.1RefSeq:NP_568625.1RefSeq:NP_851123.1scanprosite:PS00125SMART:SM00156
SMR:O82733STRING:3702.AT5G43380.1SUPFAM:SSF56300TAIR:AT5G43380tair10-symbols:TOPP6UniGene:At.1535UniProt:O82733
Coordinates (TAIR10) chr5:-:17420297..17421826
Molecular Weight (calculated) 37707.30 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.26
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPGTLNSVI NRLLEAREKP GKIVQLSETE IKQLCFVSRD IFLRQPNLLE LEAPVKICGD IHGQYPDLLR LFEHGGYPPN SNYLFLGDYV DRGKQSLETI
101: CLLLAYKIKF PENFFLLRGN HESASINRIY GFYDECKRRF SVKIWRIFTD CFNCLPVAAL IDERIFCMHG GLSPELLSLR QIRDIRRPTD IPDRGLLCDL
201: LWSDPDKDVR GWGPNDRGVS YTFGSDIVSG FLKRLDLDLI CRAHQVVEDG FEFFANKQLV TIFSAPNYCG EFDNAGAMMS VSEDLTCSFQ ILKSNDKKSK
301: FSFGSRGGAK TSFPYPKVKS ILSSQNSKEY N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)