AT5G43310.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : COP1-interacting protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
COP1-interacting protein-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:17379735..17385387 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 137403.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||
| Length | 1237 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSSTRLDSV AFQLTPTRTR CDLLVTANGK TEKIATGLLD PFLAHLKTAK DQLEKGGYSI ILKPEASDNA AWFTKGTIER FVRFVSTPEV IERVYTLETE 0101: IIQIKEAIGI QNNSEMALTV VSILGLLNTF FVVWSEVLNG ILYKQVKDDH RAKKADSAEG SRPLLQLNEE KAIVLYEPDS HPKQANRSTS SDENSKYTPL 0201: RELFFGFQCF STKRVVKYLI GNMWNCIRAQ VMKVLETRKI MLQKEQGMAF ARAVAAGFEA DDMIPLISFA KTFGASRLMD ACVKFMDLWK KKHETGQWVE 0301: IEATEVMATQ PNISTMNDSG IMFANAANMP GTPENSDAKS PTDNKRNGNQ EYVQGQHRQP MYAPWPVHSP PGTFPVFQGY TMQGMPYYPG YPGASPYPSP 0401: YPSTDDSRRG SGQRKARKHH SSCSEDSESE DQERDNEKSS RRRKSGKVVI RNINYINSKK QDNSGTESDA DDNHEEVARG ECYNGKERAT KGTEADTGDW 0501: QAFQTFLLQD ADRDERSIDH MMEKEIRGKK RQGTGKYDPL AHGERESGKY QERDTADIRN GSVTRRIRGS SDSLMVHQRE NGFENSSDPL NMNGFDTPRN 0601: GLDKRNMDDD SYIVTRVSSA RDEAGRNKRN AIDIGSEISS CYQTDGNERK QVNYEPHDLS LIPERETEKL SAGYDPALEF GSKALKKNSQ AAGGAKKLVK 0701: DPKSRLSKDA ADKRKAPGPI RKGRPTKMSP LDEARARADK LRNFKADLQK MKKEKEEEDR KRIEALKIER QKRIASKSNS AVGQSQLPAQ QTKKQILNKF 0801: SPGSRASKFS DSEPGSLSPL QRLPRRTTSL GSNDFQKFPK NGKLSTVSKS TGNMLTRSIS PLPPAKRESI ATGIRLTRSI SPLPLSKRET RVSLDTQNKS 0901: VSQTRRLSEP KMGNTSAPSS SVRPRRTIAS RKASDAPEIK KLSAIVNYDI AKIASLPELK IKPTKGPSNV MVKGVEKTKS SASGIEPSGN KNKSLCQNDI 1001: DETPVVEKTV VMVLPSSARS ISRDQVKNEK SDVVSENSTI REGVDKEGIV ETMQECGNDL VLVRLETLSD LVTETPKFLT SQSIVAKPYE APYARVSSLE 1101: DPCTVYSDCS QAPPPSLYSN ETEQETVKVL VPEKKISEAS EKSQTKESAS KGLRKLLKFG KKSQSSSVSE HHTESNNASF NSNEDHEPAV TAATTSEAFT 1201: LKNLISQDET PTAAAASQKS SRHFSLLSPF KNKKTVS |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)