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AT5G43280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1
Curator
Summary (TAIR10)
Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.
Computational
Description (TAIR10)
delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (DCI1); FUNCTIONS IN: enoyl-CoA hydratase activity, delta3,5-delta2,4-dienoyl-CoA isomerase activity; INVOLVED IN: fatty acid catabolic process, seed germination, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G16800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43280-MONOMERBioCyc:MetaCyc:AT5G43280-MONOMEREC:5.3.3.-eggNOG:ENOG410XTHXeggNOG:KOG1681EMBL:AB017070EMBL:AK316991
EMBL:AY072351EMBL:BT002198EMBL:CP002688EnsemblPlants:AT5G43280EnsemblPlants:AT5G43280.1EnsemblPlants:AT5G43280.2entrez:834346
ExpressionAtlas:Q9FHR8Gene3D:1.10.12.10Gene3D:3.90.226.10GeneID:834346GO:GO:0005777GO:GO:0006635GO:GO:0009062
GO:GO:0051750gramene_pathway:4.2.1.17gramene_pathway:5.3.3.8gramene_pathway:PWY-5138hmmpanther:PTHR11941hmmpanther:PTHR11941:SF43HOGENOM:HOG000027939
IntAct:Q9FHR8InterPro:IPR001753InterPro:IPR014748InterPro:IPR018376InterPro:IPR029045OMA:SYMRDHRPaxDb:Q9FHR8
Pfam:PF00378PhylomeDB:Q9FHR8PROSITE:PS00166ProteinModelPortal:Q9FHR8Proteomes:UP000006548RefSeq:NP_001078698.1RefSeq:NP_199142.1
scanprosite:PS00166SMR:Q9FHR8STRING:3702.AT5G43280.1SUPFAM:SSF52096TAIR:AT5G43280tair10-symbols:ATDCI1tair10-symbols:DCI1
UniGene:At.43208UniGene:At.75361UniPathway:UPA00659UniProt:Q9FHR8
Coordinates (TAIR10) chr5:+:17367947..17369113
Molecular Weight (calculated) 29922.10 Da
IEP (calculated) 7.88
GRAVY (calculated) 0.03
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)