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AT5G43260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.768
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chaperone protein dnaJ-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chaperone protein dnaJ-related; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYZIeggNOG:ENOG411299PEMBL:AY034987EMBL:AY142606EMBL:CP002688EnsemblPlants:AT5G43260EnsemblPlants:AT5G43260.1
entrez:834344Gene3D:2.10.230.10GeneID:834344GO:GO:0016021Gramene:AT5G43260.1hmmpanther:PTHR34687hmmpanther:PTHR34687:SF1
HOGENOM:HOG000029502InterPro:IPR001305KEGG:ath:AT5G43260OMA:GQFPRCPPhylomeDB:Q94CB5Proteomes:UP000006548RefSeq:NP_568623.1
SMR:Q94CB5STRING:3702.AT5G43260.1TAIR:AT5G43260TMHMM:TMhelixUniGene:At.9492UniProt:Q94CB5
Coordinates (TAIR10) chr5:-:17357693..17357986
Molecular Weight (calculated) 10066.20 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.06
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MSPIVITQLA TGISVLAGAV FIKSVMDQKP MAGQFPRCPT CNGTGRVTCF CSRWSDGDVG CRRCSGSGRA ACSNCGGSGT GRPLPAQITV QPPNRPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)