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AT5G43180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.653
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF599
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXMAeggNOG:ENOG410YJ39EMBL:AB023030EMBL:AK228079EMBL:BT005211EMBL:CP002688EnsemblPlants:AT5G43180
EnsemblPlants:AT5G43180.1entrez:834336GeneID:834336GO:GO:0016021Gramene:AT5G43180.1hmmpanther:PTHR31881hmmpanther:PTHR31881:SF5
HOGENOM:HOG000153124InterPro:IPR006747KEGG:ath:AT5G43180OMA:GYHAYLWPfam:PF04654PhylomeDB:Q9LUH6Proteomes:UP000006548
RefSeq:NP_199132.1TAIR:AT5G43180TMHMM:TMhelixUniGene:At.30132UniProt:Q9LUH6
Coordinates (TAIR10) chr5:-:17336425..17337816
Molecular Weight (calculated) 26540.80 Da
IEP (calculated) 9.61
GRAVY (calculated) 0.49
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MRMKIDTDSI VVPLSLLIAV GYHVFLWNTF KHNPSRTSLG IDSSKRKSWF RDIKEGDDKT GMLAVQSLRN KKMVTILTAT IAILIFLSLA AVTNNAFKAS
101: HLITAADDIF FGSQNAKIFV LKYASASLLL AASFFFSSIA LSYLMDAIFL INAIAKKHEG DCDCAYDITG TSSFREYTRL VLERGFFMAM VGNRVMCVSI
201: PLLLWMFGPL PVLASSLGLV WVLYQFDFPS TAKISVCKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)